View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17389_high_16 (Length: 250)
Name: NF17389_high_16
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32613321 - 32613560
Alignment:
| Q |
1 |
tacaaacttaccttttgatagaaccaagaatggagggttcacttaaggcatctcagcaaggtacttaggtgcagcttgacatctattaaatttctacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32613321 |
tacaaacttaccttttgatagaaccaagaatggagggttcacttaaggcatctcagcaaggtacttaggtgcagcttgacatctattaaatttctacttt |
32613420 |
T |
|
| Q |
101 |
ttagcaggttgtggcagaatgtgatatttatcctaatctcagcaaaatatgcacacagaccactttgtcactaggagacagttacaaagtctctattgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32613421 |
ttagcaggttgtggcagaatgtgatatttatcctaatctcagcaaaatatgcacacaaaccactttgtcactagtagacagttacaaagtctctattgta |
32613520 |
T |
|
| Q |
201 |
gtggattgtgaatccatcatgcgcgtgttcaatatctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32613521 |
gtggattgtgaatccatcatgcgcgtgttcaatatctgtg |
32613560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 32576963 - 32577070
Alignment:
| Q |
133 |
ctaatctcagcaaaatatgcacacagaccactttgtcactaggagacagttacaaagtctctattgtagtggattgtgaatccatcatgcgcgtgttcaa |
232 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
32576963 |
ctaatttcagcaagatatgcacacaaaccactttgtcactagtagacagttacaaagtctctattgtagtggattgcaaatccatcatgctcgagttcaa |
32577062 |
T |
|
| Q |
233 |
tatctgtg |
240 |
Q |
| |
|
| |||||| |
|
|
| T |
32577063 |
tttctgtg |
32577070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32576844 - 32576907
Alignment:
| Q |
1 |
tacaaacttaccttttgatagaaccaagaatggagggttcacttaaggcatctcagcaaggtac |
64 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
32576844 |
tacaaacttatcttttgatagaaccaagaatggagggttcactttaggcatttcagcaaggtac |
32576907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 32571596 - 32571678
Alignment:
| Q |
89 |
aatttctactttttagcaggttgtggcagaatgtgatatttatcctaatctcagcaaaatatgcacacaga-ccactttgtca |
170 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||||| || ||||||||| ||| |||||| |||| | ||||||||||| |
|
|
| T |
32571596 |
aatttctaccttttagcaggtggtgatggaatgtgatattcattctaatctcaacaagatatgcccacacagccactttgtca |
32571678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University