View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17389_high_2 (Length: 556)
Name: NF17389_high_2
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 123 - 540
Target Start/End: Complemental strand, 1712710 - 1712293
Alignment:
| Q |
123 |
atatcacaatccttttgtgttcatattagacatgatttattaataaaatactaatgacattatttttattaatattctcttatttatggtatatcaactc |
222 |
Q |
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| T |
1712710 |
atatcacaatcctttcgtgttcatattagacatgatttattaataaaatactaatgacattatttttattaatattctcttatttattgtatatcaactc |
1712611 |
T |
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| Q |
223 |
aattaaacttatcctttaacaaatactaatatcaatattttaataaataaaacacattttattattgaaaccgaatatattaagtaatttttcaagaagg |
322 |
Q |
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| T |
1712610 |
aattaaaattatcctttaacaaatactaataacaatattttaataaataaaactcattttattattgaaaccgagtatattaagtaatttttcaagaagg |
1712511 |
T |
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| Q |
323 |
atatattgttttaagagaaatggtaacaaatatcttaataatattagttaagaagtctaaagtgaaattttttattgaaaatgatgcattcaatgtttga |
422 |
Q |
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| T |
1712510 |
atatattgttttaagagaaatggtaacaaatatcttaataatattagttaagaagtccaaagtgaaattttttattgaaaatgatgcattcaatgtttga |
1712411 |
T |
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| Q |
423 |
aactttataaaagaactttttctatatagaaattctacatcaattttctattttaatttagtgtatttgttacatgccccttgttttagaagagtacatc |
522 |
Q |
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| T |
1712410 |
aactttataaaagaactttttctatatagaaattctacatcaattttctgttttaatttagtgtatttgttacatgccccttgttttagaagagtacatc |
1712311 |
T |
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| Q |
523 |
acggagtaacaaaaagat |
540 |
Q |
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| T |
1712310 |
acggagtaacaaaaagat |
1712293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 1713292 - 1713187
Alignment:
| Q |
1 |
attccctgagacgggctcttgaatattccaaacaatcggagtatgatggtgtcaattattaattaattgtcttttagattaatttgattgttggcttcga |
100 |
Q |
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| T |
1713292 |
attccttgagacgagctcttgaatatttcaaacaatcggagtatgatggtgtcaatcattaattaattgtctcttagattagcttgatcgttggcttcga |
1713193 |
T |
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| Q |
101 |
gtctga |
106 |
Q |
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|||||| |
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| T |
1713192 |
gtctga |
1713187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 446
Target Start/End: Original strand, 45153493 - 45153580
Alignment:
| Q |
361 |
taatattagttaagaagtctaaagtg-aaattttttattgaaaatgatgcattcaatgt-ttgaaactttataaaagaactttttcta |
446 |
Q |
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| T |
45153493 |
taataatagttaagaattctaaagaataaattttatcttgaaaatggtgcattcaatgcattgaaactttataaagtaactttttcta |
45153580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 45034519 - 45034555
Alignment:
| Q |
256 |
aatattttaataaataaaacacattttattattgaaa |
292 |
Q |
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| T |
45034519 |
aatattttaataaataaaacatattttactattgaaa |
45034555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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