View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17389_high_20 (Length: 228)
Name: NF17389_high_20
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_20 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 14283004 - 14283231
Alignment:
| Q |
1 |
aggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataa |
100 |
Q |
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| T |
14283004 |
aggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataa |
14283103 |
T |
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| Q |
101 |
ggactcaaagttctatcggtggaaaccgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14283104 |
ggactcaaagttctatcggtggaaactgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatgacaa |
14283203 |
T |
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| Q |
201 |
aaaagaacacagataatggaagattaac |
228 |
Q |
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| T |
14283204 |
aaaagaacacagataatggaagattaac |
14283231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 14304766 - 14304989
Alignment:
| Q |
5 |
acatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggac |
104 |
Q |
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| T |
14304766 |
acatcttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggac |
14304865 |
T |
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| Q |
105 |
tcaaagttctatcggtggaaaccgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaa |
204 |
Q |
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| T |
14304866 |
tcaaagttctatcgattgaaatcgatggatatgtggctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatgacaaaaaa |
14304965 |
T |
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| Q |
205 |
gaacacagataatggaagattaac |
228 |
Q |
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| T |
14304966 |
gaacacagataatggaagattaac |
14304989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 14321153 - 14321380
Alignment:
| Q |
1 |
aggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||| ||||||| ||||||| ||| ||||| |||||| |
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| T |
14321153 |
aggtacatcttctagtttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataa |
14321252 |
T |
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| Q |
101 |
ggactcaaagttctatcggtggaaaccgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaa |
200 |
Q |
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|||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |
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| T |
14321253 |
ggactcaaagttctatcggtcgaaattgaccgatatgttgctactacatcggatattcttatcacgtgaatacctgatgacccttttacggatatcacaa |
14321352 |
T |
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| Q |
201 |
aaaagaacacagataatggaagattaac |
228 |
Q |
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| T |
14321353 |
aaaagaacacagataatggaagattaac |
14321380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 25885839 - 25886062
Alignment:
| Q |
5 |
acatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggac |
104 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |
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| T |
25885839 |
acatcttctagtttaaggggagttttgtaacctttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggac |
25885938 |
T |
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| Q |
105 |
tcaaagttctatcggtggaaaccgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaa |
204 |
Q |
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||||| ||| ||| || | |||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| | || |||||| ||||||| |
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| T |
25885939 |
tcaaatttccatcagttggaaccgatgtatatgtcgctactacatcggatattcttatcacatgaatccctgatgaccctctaatggatatgacaaaaaa |
25886038 |
T |
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| Q |
205 |
gaacacagataatggaagattaac |
228 |
Q |
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||||| |||||||||||||||||| |
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| T |
25886039 |
gaacaaagataatggaagattaac |
25886062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 44349685 - 44349906
Alignment:
| Q |
7 |
atcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactc |
106 |
Q |
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|||||||||||||||||| |||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
44349685 |
atcttctagtttaaggggagttttgtaaccgttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactc |
44349784 |
T |
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| Q |
107 |
aaagttctatcggtggaaaccgatggatatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaaga |
206 |
Q |
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||| ||| ||| || | ||| |||| |||||| ||||||||||||||||||||||||||| |||| |||||||||||| | || |||||| ||||||||| |
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| T |
44349785 |
aaatttccatcagtcggaactgatgtatatgtcgctactacatcggatattcttatcacaagaatccctgatgaccctctaatggatatgacaaaaaaga |
44349884 |
T |
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| Q |
207 |
acacagataatggaagattaac |
228 |
Q |
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| T |
44349885 |
acgcagataatggaagattaac |
44349906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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