View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17389_high_5 (Length: 393)
Name: NF17389_high_5
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 9870827 - 9871029
Alignment:
| Q |
172 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9870827 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
9870926 |
T |
|
| Q |
272 |
atattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaa |
371 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9870927 |
atattcttttagacatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataattccaa |
9871026 |
T |
|
| Q |
372 |
ggt |
374 |
Q |
| |
|
||| |
|
|
| T |
9871027 |
ggt |
9871029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 9870670 - 9870770
Alignment:
| Q |
16 |
atattaacatttattgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaatcagggtacatg |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9870670 |
atattaacatttaccgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaatcagggtacatg |
9870769 |
T |
|
| Q |
116 |
c |
116 |
Q |
| |
|
| |
|
|
| T |
9870770 |
c |
9870770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 350
Target Start/End: Original strand, 9876367 - 9876544
Alignment:
| Q |
174 |
tatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaag-caaaatgattcctacta |
272 |
Q |
| |
|
|||||||||| ||| ||| ||||| |||||| || || |||||||| ||| ||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9876367 |
tatgttcctaatgccagtacttacctatgacactatatcatcatgcgcataaaaatgtgaactccaaattacactaacaaaggcaaaatgattcctacta |
9876466 |
T |
|
| Q |
273 |
tattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattat |
350 |
Q |
| |
|
|| ||||||||| ||||| |||||||| | ||||||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
9876467 |
taatcttttagacatgtccatttcaatatggacctacatggattttatctacttatataatgttttaaaaaacattat |
9876544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University