View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17389_high_7 (Length: 338)
Name: NF17389_high_7
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 37989542 - 37989849
Alignment:
| Q |
13 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatg |
112 |
Q |
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| T |
37989542 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatg |
37989641 |
T |
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| Q |
113 |
gctaggtgttgattgtgacaactacaaccgaacctaccgtatcactagtcttgatctccgcaacatcagcctccccaaacctgtcccaattccaacctcc |
212 |
Q |
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| T |
37989642 |
gctaggtgtagattgtgacaacttcaaccgaacctaccgtatcaccggtcttgatctcgaaaacatcaacctccctaaacctgtcccaattccaccttcc |
37989741 |
T |
|
| Q |
213 |
atattcaacctccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatccctccttccatctccaaactctccaaactcaatt |
312 |
Q |
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|||||||| ||||||| | ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37989742 |
atattcaatctcccttccctaaacgtcctctatctggcctacatgcccaaccttgttggccctatccctccttccatctccaaactctccaaactcaatt |
37989841 |
T |
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| Q |
313 |
atatctac |
320 |
Q |
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|||||||| |
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| T |
37989842 |
atatctac |
37989849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 38013259 - 38013351
Alignment:
| Q |
13 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaaca |
105 |
Q |
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| T |
38013259 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacacagactgctgcaaca |
38013351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 37697804 - 37697748
Alignment:
| Q |
31 |
tactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
87 |
Q |
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| T |
37697804 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
37697748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 37993735 - 37993832
Alignment:
| Q |
16 |
atgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatgg |
113 |
Q |
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||||||||| |||||| | ||||| || ||| ||||||||||||| | | ||||||||||||||||| |||| | ||||||||| ||| | |||||| |
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| T |
37993735 |
atgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattcaactaccgactgctgcaacggaacatgg |
37993832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 37993905 - 37993943
Alignment:
| Q |
192 |
cctgtcccaattccaacctccatattcaacctccctttc |
230 |
Q |
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| T |
37993905 |
cctgttccaattccaccctccatattcaacctccctttc |
37993943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 25326317 - 25326445
Alignment:
| Q |
182 |
cctccccaaacctgtcccaattccaacctccatattca---acctccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatc |
278 |
Q |
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||||||||||| || | ||||||| |||||||||||| ||||||||||| ||||||| |||| | ||| | |||| |||||||| |||||| ||||| |
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| T |
25326317 |
cctccccaaacacgttcaaattccaccctccatattcactaacctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactatc |
25326416 |
T |
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| Q |
279 |
cctccttccatctccaaactctccaaact |
307 |
Q |
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|| |||||||||||||||||| ||||||| |
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| T |
25326417 |
ccgccttccatctccaaactcaccaaact |
25326445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 18138354 - 18138386
Alignment:
| Q |
18 |
gacaaaagaaccctactccaaataaagaaagaa |
50 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
18138354 |
gacaaaagaaccctactccaaatcaagaaagaa |
18138386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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