View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17389_low_12 (Length: 324)

Name: NF17389_low_12
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17389_low_12
NF17389_low_12
[»] chr2 (8 HSPs)
chr2 (213-302)||(7296481-7296570)
chr2 (45-128)||(7296655-7296739)
chr2 (214-296)||(7295066-7295147)
chr2 (79-128)||(10455700-10455748)
chr2 (79-128)||(24457845-24457893)
chr2 (79-127)||(6319287-6319334)
chr2 (77-120)||(7575654-7575696)
chr2 (79-128)||(38932537-38932585)
[»] chr4 (10 HSPs)
chr4 (213-296)||(6504462-6504543)
chr4 (247-296)||(6505479-6505528)
chr4 (74-128)||(19869704-19869757)
chr4 (77-128)||(7113880-7113930)
chr4 (77-124)||(43940409-43940456)
chr4 (77-128)||(47649399-47649449)
chr4 (79-128)||(6504257-6504305)
chr4 (77-121)||(14270130-14270173)
chr4 (80-128)||(24577939-24577986)
chr4 (76-128)||(26923839-26923890)
[»] scaffold0217 (1 HSPs)
scaffold0217 (213-296)||(1754-1835)
[»] chr7 (4 HSPs)
chr7 (77-128)||(47251966-47252016)
chr7 (77-128)||(33982621-33982671)
chr7 (77-128)||(41405938-41405988)
chr7 (77-128)||(586188-586238)
[»] chr6 (3 HSPs)
chr6 (69-127)||(12782967-12783025)
chr6 (77-125)||(24158987-24159034)
chr6 (79-128)||(5090386-5090434)
[»] chr5 (3 HSPs)
chr5 (77-128)||(5103007-5103057)
chr5 (80-127)||(3033069-3033115)
chr5 (78-126)||(7179660-7179707)
[»] chr1 (2 HSPs)
chr1 (78-128)||(44299066-44299115)
chr1 (77-128)||(43847758-43847807)
[»] scaffold0014 (1 HSPs)
scaffold0014 (79-128)||(71852-71900)
[»] chr3 (5 HSPs)
chr3 (72-128)||(42167566-42167621)
chr3 (77-128)||(50935460-50935510)
chr3 (77-107)||(7041569-7041599)
chr3 (79-128)||(6488922-6488970)
chr3 (79-107)||(55135197-55135225)
[»] chr8 (1 HSPs)
chr8 (79-126)||(45407245-45407291)
[»] scaffold0208 (1 HSPs)
scaffold0208 (77-126)||(3860-3908)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 7296570 - 7296481
Alignment:
Q  213 ctcacataaattaatttttcttctttaattgtgctatttatgttttatgaccatgaaaaaaatttatatttaagatttcgttctgctctc 302  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7296570 ctcacatatattaatttttcttctttaattgtgctatttatgttttatgaccaagaaaaaaatttatatttaagatttcgttctgctctc 7296481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 7296739 - 7296655
Alignment:
Q  45 gtgacaacttaaatcttactcctatataattgggtt--ttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| | ||||||||| ||||||||    
T  7296739 gtgacaactaaaatcttactcctatataattgggttttttttctatattatcctctcttgtttag-gaggtatttactccttcaag 7296655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 7295066 - 7295147
Alignment:
Q  214 tcacataaattaatttttcttctttaattgtgctatttatgttttatgaccatgaaaa-aaatttatatttaagatttcgttct 296  Q
    ||||||| |||||||||||||||||||||    |||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  7295066 tcacatatattaatttttcttctttaattta--tatttatgttttttgaccaagaaaaaaaatttatatttaagatttcgttct 7295147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 10455748 - 10455700
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  10455748 ttttttctacattatcctctcttgtttag-agggtatttatcccttcaag 10455700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 24457845 - 24457893
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  24457845 ttttttctacattaccctctcttgtttag-agggtatttaccccttcaag 24457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 6319287 - 6319334
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaa 127  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  6319287 ttttttctacattaccctctcttgtttagcgggg-atttaccccttcaa 6319334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 7575696 - 7575654
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttacc 120  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  7575696 ggttttttctacattaccctctcttgtttag-ggggtatttacc 7575654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 38932585 - 38932537
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||| ||||||||||||||  |||||||||| ||||||||    
T  38932585 ttttttctacattaccctctcttgtttag-agggtatttactccttcaag 38932537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 6504462 - 6504543
Alignment:
Q  213 ctcacataaattaatttttcttctttaattgtgctatttatgttttatgaccatgaaaaaaatttatatttaagatttcgttct 296  Q
    |||||||| |||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6504462 ctcacatatattaatttttcttctttaattta--tatttatgttttatgaccaagaaaaaaatttatatttaagatttcgttct 6504543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 6505528 - 6505479
Alignment:
Q  247 tatttatgttttatgaccatgaaaaaaatttatatttaagatttcgttct 296  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  6505528 tatttatgttttttgaccaagaaaaaaatttatatttaagatttcgttct 6505479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 19869704 - 19869757
Alignment:
Q  74 ttgggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  19869704 ttgggttttttctacattatcctctcttgttta-tagggtatttaccctttcaag 19869757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 7113930 - 7113880
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  7113930 ggttttttctgcattaccctctcttgtttag-agggtatttaccccttcaag 7113880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 43940456 - 43940409
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttacccctt 124  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||||    
T  43940456 ggttttttctacattaccctctcttgtttagagggtaatttacccctt 43940409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 47649399 - 47649449
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||| ||| ||||||||||  |||||||||||||||||||    
T  47649399 ggttttttctacattaccctatcttgtttag-agggtatttaccccttcaag 47649449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 6504257 - 6504305
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||| ||| |||||||||||||| |||||||||||| |||||||    
T  6504257 ttttttctacgttaccctctcttgtttag-ggggtatttacctcttcaag 6504305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 14270173 - 14270130
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccc 121  Q
    |||||||||||| ||| |||||||||||||| |||||||||||||    
T  14270173 ggttttttctacgttaccctctcttgtttag-ggggtatttaccc 14270130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 24577986 - 24577939
Alignment:
Q  80 tttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||||||| ||||||||||||| | |||||||||||| ||||||    
T  24577986 tttttctacattaccctctcttgttta-tagggtatttaccctttcaag 24577939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 26923890 - 26923839
Alignment:
Q  76 gggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||||||||||| ||||||||||||||  || |||||||| |||||||    
T  26923890 gggttttttctacattaccctctcttgtttag-aggatatttaccacttcaag 26923839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 1754 - 1835
Alignment:
Q  213 ctcacataaattaatttttcttctttaattgtgctatttatgttttatgaccatgaaaaaaatttatatttaagatttcgttct 296  Q
    |||||||| |||||||||||||||||||||    |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  1754 ctcacatatattaatttttcttctttaattta--tatttatgttttttgaccaagaaaaaaatttatatttaagatttcgttct 1835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 47251966 - 47252016
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  47251966 ggttttttctacattaccctctcttgtttag-ggggtatttaccccttcaag 47252016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 33982671 - 33982621
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  33982671 ggttttttctacattaccctctcttgtttag-agggtatttaccccttcaag 33982621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 41405938 - 41405988
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  41405938 ggttttttctacattaccctctcttgtttag-ggggtatttatcccttcaag 41405988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 586238 - 586188
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||||||||||  ||||||| |||| |||||||||||||||||||||    
T  586238 ggttttttctacattactctctcttattta-tggggtatttaccccttcaag 586188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 12782967 - 12783025
Alignment:
Q  69 tataattgggttttttctacattatcctctcttgtttagtggggtatttaccccttcaa 127  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  12782967 tataatagggttttttctacattaccctctcttatttaggggggtatttatcccttcaa 12783025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 24158987 - 24159034
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttc 125  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  24158987 ggttttttctacattaccctcttttgtttag-ggggtatttaccccttc 24159034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 5090434 - 5090386
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||| ||||||||||| |  ||||||||||||||||||||    
T  5090434 ttttttctacattaccctctcttgttca-aggggtatttaccccttcaag 5090386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 5103057 - 5103007
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  5103057 ggttttttcaacattaccctctcttgttta-tggggtatttaccccttcaag 5103007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 3033069 - 3033115
Alignment:
Q  80 tttttctacattatcctctcttgtttagtggggtatttaccccttcaa 127  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  3033069 tttttctacattaccctctcttgtttag-agggtatttaccccttcaa 3033115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 7179660 - 7179707
Alignment:
Q  78 gttttttctacattatcctctcttgtttagtggggtatttaccccttca 126  Q
    |||||||||| |||| ||||||||||||||  |||||||||||||||||    
T  7179660 gttttttctagattaccctctcttgtttag-agggtatttaccccttca 7179707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 44299066 - 44299115
Alignment:
Q  78 gttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  44299066 gttttttctacattaccctctcttgtttag-agggtatttaccccttcaag 44299115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 43847807 - 43847758
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||| |||||||||||||  |||||||||||| |||||||    
T  43847807 ggttttttctacattaccctctcttgttta--ggggtatttacctcttcaag 43847758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 71900 - 71852
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  71900 ttttttctacattatcctctcttgtttag-gggatatttaccctttcaag 71852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 42167621 - 42167566
Alignment:
Q  72 aattgggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||| |||||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  42167621 aatttggttttttctacgttaccctctcttgttta-tgaggtatttaccccttcaag 42167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 50935460 - 50935510
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||||| ||||||||||||||  |||||||||||| ||||||    
T  50935460 ggttttttctacattaccctctcttgtttag-agggtatttaccctttcaag 50935510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 7041569 - 7041599
Alignment:
Q  77 ggttttttctacattatcctctcttgtttag 107  Q
    |||||||||||||||||||||||||||||||    
T  7041569 ggttttttctacattatcctctcttgtttag 7041599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 6488922 - 6488970
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttcaag 128  Q
    |||||||||||||| ||| | |||||||| ||||||||||||||||||||    
T  6488922 ttttttctacattaccctattttgtttag-ggggtatttaccccttcaag 6488970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 55135197 - 55135225
Alignment:
Q  79 ttttttctacattatcctctcttgtttag 107  Q
    |||||||||||||||||||||||||||||    
T  55135197 ttttttctacattatcctctcttgtttag 55135225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 45407245 - 45407291
Alignment:
Q  79 ttttttctacattatcctctcttgtttagtggggtatttaccccttca 126  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  45407245 ttttttctagattatcctctcttgtttag-agggtatttaccccttca 45407291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 3860 - 3908
Alignment:
Q  77 ggttttttctacattatcctctcttgtttagtggggtatttaccccttca 126  Q
    ||||||||||| |||| ||||||||||||||  |||||||||||||||||    
T  3860 ggttttttctagattaccctctcttgtttag-agggtatttaccccttca 3908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University