View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17389_low_13 (Length: 285)
Name: NF17389_low_13
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 102 - 270
Target Start/End: Original strand, 32613122 - 32613290
Alignment:
| Q |
102 |
aaagtggaatttagcacctaattgttctatttgaagatagttattaaaaaatggctagttgtatgcagataccttatttgcactatgtatgcattcaaac |
201 |
Q |
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| T |
32613122 |
aaagtggaatttagcacctaattgttctatttgaagatagttattaaaaaatggctagttgtatgcagataccttatttgcactatgtatgcattcaaac |
32613221 |
T |
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| Q |
202 |
ttaaattttgggatacaatgctgattcgcctccctttcatttagttcgttataagaccaacgacttcat |
270 |
Q |
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| T |
32613222 |
ttaaattttgggatacaatgctgattcgcctccctttcatttagttcgttataagaccaacgacttcat |
32613290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 270
Target Start/End: Original strand, 32576647 - 32576810
Alignment:
| Q |
102 |
aaagtggaatttagcacctaattgttctatttgaagat-----ag--ttattaaaaaatggctagttgtatgcagataccttatttgcactatgtatgca |
194 |
Q |
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| T |
32576647 |
aaagtggaatttagcacctaattgttctctttgttgatgtaaaaggtttattaaaaaatggctagttgtatgc-------ttatttgcactttg----ca |
32576735 |
T |
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| Q |
195 |
ttcaaacttaaattttgggatacaatgctgattcgcctccctttcatttagttcgttataagaccaacgacttcat |
270 |
Q |
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| T |
32576736 |
ttcaaacttaaattttgggatacaatgctgattcgcctccctttcatttagttcgtta-aagaccaacaacttcat |
32576810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 32612994 - 32613082
Alignment:
| Q |
16 |
caagatcaaatataacgatatttttcctcattcttttttgttgaagagaatagaatctaaaaggtttttgctgacgataatttggtaaa |
104 |
Q |
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| T |
32612994 |
caagatcaaagataaccatctttttcctcattcttttttgttgaagaggatagaatctaaaaggtttttgctggcgataatttggtaaa |
32613082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 32576520 - 32576607
Alignment:
| Q |
16 |
caagatcaaatataacgatatttttcctcattcttttttgttgaagagaatagaatctaaaaggtttttgctgacgataatttggtaaa |
104 |
Q |
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| T |
32576520 |
caagatcaaatataaccatctttttcctcattctttttagttgaataggatagaatataaaagg-ttttgctggagataatttggtaaa |
32576607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 32571228 - 32571314
Alignment:
| Q |
17 |
aagatcaaatataacgatatttttcctcattcttttttgttgaagagaatagaatctaaaaggtttttgctgacgataatttggtaaa |
104 |
Q |
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| T |
32571228 |
aagatcaattgtaaccatctttttcttcattcttttttgttgaagaggatagaatgtaaaa-gtgtttgttggagataatttggtaaa |
32571314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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