View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17389_low_14 (Length: 285)
Name: NF17389_low_14
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 17737619 - 17737381
Alignment:
| Q |
29 |
aacaacagacattttagcatgaaatatctacttcttaaaatatatacacacacatactattaaacttgaaaattgacccccaaaaaatgtgactagaggg |
128 |
Q |
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| T |
17737619 |
aacaatagacattttagcatgaaatatctacttcttaaaatata--cacacacatactattaaacttgaaaattaacccccaaaaaatgtgactagagg- |
17737523 |
T |
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| Q |
129 |
tcatattctagcgtctattttttattatttt--tagattctaacgtctaatatcttcattcttaaccatgaaccaagaaagtaaatgaggtatatttgtc |
226 |
Q |
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||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17737522 |
tcatattctagcgtctattttttttttttttattagattctaacgtctaatatcttcattcttaaccatgaaccaaga--gtaaatgaggtatatttgtc |
17737425 |
T |
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| Q |
227 |
cgtggctataagatgaatacgacctaacgtgcttgattcaaaat |
270 |
Q |
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| T |
17737424 |
cgtagctataagatgaatacgacctaacgtgcttgattcaaaat |
17737381 |
T |
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