View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17389_low_18 (Length: 244)

Name: NF17389_low_18
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17389_low_18
NF17389_low_18
[»] chr3 (6 HSPs)
chr3 (15-219)||(29518603-29518807)
chr3 (15-219)||(5333264-5333468)
chr3 (98-185)||(38274669-38274754)
chr3 (15-99)||(12835891-12835975)
chr3 (98-173)||(12835475-12835548)
chr3 (28-99)||(38274463-38274534)
[»] chr8 (4 HSPs)
chr8 (15-99)||(10626265-10626349)
chr8 (15-99)||(21117091-21117175)
chr8 (99-159)||(10626668-10626728)
chr8 (99-159)||(21117519-21117579)
[»] chr4 (2 HSPs)
chr4 (98-159)||(1240598-1240659)
chr4 (15-99)||(1240171-1240255)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 29518603 - 29518807
Alignment:
Q  15 cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagtcacaccctttctttt 114  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  29518603 cataagcatcatctgaaatgtcttctagttcatcgagagcatccacacacttggtaagagaacaatccgaggttacatgcgaagtcacaccctttctttt 29518702  T
Q  115 gaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaacccactt 214  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29518703 gaaactgtgcagctttgggatgtacctgaaatgatatattcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaaaccactt 29518802  T
Q  215 agaaa 219  Q
    |||||    
T  29518803 agaaa 29518807  T

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Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 5333468 - 5333264
Alignment:
Q  15 cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagtcacaccctttctttt 114  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  5333468 cataagcatcatctgaaatgtcttctagttcatcgagagcatccacacacttggtaagagaacaatccgaggttacatgcgaagtcacaccctttctttt 5333369  T
Q  115 gaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaacccactt 214  Q
    |||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5333368 gaaactgtgcagctttaggatgtacctgaaatgatatattcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaaaccactt 5333269  T
Q  215 agaaa 219  Q
    |||||    
T  5333268 agaaa 5333264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 38274669 - 38274754
Alignment:
Q  98 gtcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaatatagcctataga 185  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||| |||||||||||||||    
T  38274669 gtcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgc--atatcatcaataaaatatagcctataga 38274754  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 12835975 - 12835891
Alignment:
Q  15 cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt 99  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| | | |||||| |||||||    
T  12835975 cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccgaagttacacgcgaagt 12835891  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 12835548 - 12835475
Alignment:
Q  98 gtcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaat 173  Q
    |||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  12835548 gtcacaccatttattttgaaactgtgcagctttgggatgtacctgaaatgatatatgc--atatcatcaatacaat 12835475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 38274463 - 38274534
Alignment:
Q  28 tgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt 99  Q
    |||||||||||  |||||||| |||||||||||||||||||||| |||||||| ||| |||||| |||||||    
T  38274463 tgaaatgtcttatagttcatcaagagcagccacacacttggtaagagaacaatccaaagttacacgcgaagt 38274534  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 10626265 - 10626349
Alignment:
Q  15 cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt 99  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||    
T  10626265 cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccaaagttacacgcgaagt 10626349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 21117091 - 21117175
Alignment:
Q  15 cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt 99  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||    
T  21117091 cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccaaagttacacgcgaagt 21117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 10626668 - 10626728
Alignment:
Q  99 tcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatat 159  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  10626668 tcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgcatat 10626728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 21117519 - 21117579
Alignment:
Q  99 tcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatat 159  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  21117519 tcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgcatat 21117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 1240598 - 1240659
Alignment:
Q  98 gtcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatat 159  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  1240598 gtcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgcatat 1240659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 1240171 - 1240255
Alignment:
Q  15 cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt 99  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| | | |||||| |||||||    
T  1240171 cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccgaagttacacgcgaagt 1240255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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