View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17389_low_19 (Length: 238)

Name: NF17389_low_19
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17389_low_19
NF17389_low_19
[»] chr5 (2 HSPs)
chr5 (1-221)||(2064441-2064661)
chr5 (151-203)||(2063978-2064030)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-116)||(358992-359106)
[»] chr6 (2 HSPs)
chr6 (2-116)||(14898808-14898922)
chr6 (2-112)||(7407692-7407802)
[»] chr2 (1 HSPs)
chr2 (2-116)||(21596524-21596638)
[»] chr4 (4 HSPs)
chr4 (19-112)||(22329497-22329590)
chr4 (2-77)||(14807976-14808051)
chr4 (19-112)||(54954216-54954309)
chr4 (36-112)||(19133241-19133317)
[»] scaffold0005 (1 HSPs)
scaffold0005 (2-77)||(31676-31751)
[»] chr7 (4 HSPs)
chr7 (2-112)||(4806860-4806970)
chr7 (2-112)||(12765477-12765587)
chr7 (2-112)||(13823251-13823361)
chr7 (16-112)||(13566238-13566334)
[»] chr3 (1 HSPs)
chr3 (2-112)||(23010182-23010292)
[»] chr8 (1 HSPs)
chr8 (16-98)||(14322223-14322305)
[»] chr1 (1 HSPs)
chr1 (16-112)||(23958827-23958923)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2064441 - 2064661
Alignment:
Q  1 tcctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacatta 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064441 tcctttgtttctttcatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacatta 2064540  T
Q  101 aaactgccctcaatgttttcacatctaactgaagcttctggttttatattggcactacaatccataaccgatggaattgcctgcacagaaaattaaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2064541 aaactgccctcaatgttttcacatctaactgaagcttctggttttatattggcactacaatccataaccgatggaattgcctgcacagaaaattaaattt 2064640  T
Q  201 cttaacaaagaaacagcatct 221  Q
    |||||||||||||||||||||    
T  2064641 cttaacaaagaaacagcatct 2064661  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 2064030 - 2063978
Alignment:
Q  151 ggcactacaatccataaccgatggaattgcctgcacagaaaattaaatttctt 203  Q
    |||||||||||||||||| |||||||||||||||||| || ||| ||||||||    
T  2064030 ggcactacaatccataactgatggaattgcctgcacaaaagattgaatttctt 2063978  T

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Target: scaffold0002 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 358992 - 359106
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  358992 cctttgtatctttcatgcaatgaggacaagctaatctaccatgagtcgaccatccagacaacatgccatatgcaggaaagtcgttaatagtccacattaa 359091  T
Q  102 aactgccctcaatgt 116  Q
    | |||||||||||||    
T  359092 agctgccctcaatgt 359106  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 14898922 - 14898808
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  14898922 cctttgtatctttcatgcaatgaggacaagctaatctaccatgagtcgaccatccagacaacatgccatatgcaggaaagtcgttaatagtccacattaa 14898823  T
Q  102 aactgccctcaatgt 116  Q
    | |||||||||||||    
T  14898822 agctgccctcaatgt 14898808  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 7407692 - 7407802
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||||| ||  || ||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |     
T  7407692 cctttgtttgttccatgcaatgtggacaagccaatcttccatgagtcgaccatccagacaacattccatatgcaggaaagtcgttaatagtccacatcag 7407791  T
Q  102 aactgccctca 112  Q
    | |||||||||    
T  7407792 agctgccctca 7407802  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 21596638 - 21596524
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  21596638 cctttgtatctttcatgcaatgaggacaagctaatctaccatgagtcgaccatccagacaacatgccatatgcaggaaagtcgttaatagtccacattaa 21596539  T
Q  102 aactgccctcaatgt 116  Q
    | |||||||||||||    
T  21596538 agctgccctcaatgt 21596524  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 22329590 - 22329497
Alignment:
Q  19 caatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaaaactgccctca 112  Q
    ||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  22329590 caatgtggacaagccaatcttccatgagtcgaccatccagacaacattccatatgcaggaaagtcgttaatagtccacatcaaagctgccctca 22329497  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 14808051 - 14807976
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcagg 77  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14808051 cctttgtatctttcatgcaatgaggacaagctaatctaccatgagtcgaccatccagacaacatgccatatgcagg 14807976  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 54954216 - 54954309
Alignment:
Q  19 caatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaaaactgccctca 112  Q
    ||||| |||||||| ||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  54954216 caatgtggacaagccaatcttccatgagtcggccatccagacaacattccatatgcaggaaagtcgttaatagtccacatcaaagctgccctca 54954309  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 19133317 - 19133241
Alignment:
Q  36 tctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaaaactgccctca 112  Q
    |||||||||||||  ||| ||| ||||||| ||||| |||||||||||||| |||||| |||| ||| |||||||||    
T  19133317 tctaccatgagtcccccaaccagacaacatcccatacgcaggaaagtcgttgatagtccacatcaaagctgccctca 19133241  T

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Target: scaffold0005 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 31676 - 31751
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcagg 77  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31676 cctttgtatctttcatgcaatgaggacaagctaatctaccatgagtcgaccatccagacaacatgccatatgcagg 31751  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 4806860 - 4806970
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||||| ||  || ||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |     
T  4806860 cctttgtttgttccatgcaatgtggacaagccaatcttccatgagtcgaccatccagacaacattccatatgcaggaaagtcgttaatagtccacatcag 4806959  T
Q  102 aactgccctca 112  Q
    | |||||||||    
T  4806960 agctgccctca 4806970  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 12765477 - 12765587
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||||| ||  || ||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |     
T  12765477 cctttgtttgttccatgcaatgtggacaagccaatcttccatgagtcgaccatccagacaacattccatatgcaggaaagtcgttaatagtccacatcag 12765576  T
Q  102 aactgccctca 112  Q
    | |||||||||    
T  12765577 agctgccctca 12765587  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 13823361 - 13823251
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||||| ||  || ||||| |||||| | ||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||| |     
T  13823361 cctttgtttgttccatgcaatgtggacaaaccaatcttccatgagttgaccatccagacaacattccatatgcaggaaagtcgttaatagtccacatcag 13823262  T
Q  102 aactgccctca 112  Q
    | |||||||||    
T  13823261 agctgccctca 13823251  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 13566334 - 13566238
Alignment:
Q  16 atacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaaaactgccctca 112  Q
    |||||||||||  |||| | |||||||||||||  ||| ||| ||||||| ||||| |||||||||||||| |||||| |||| ||| | |||||||    
T  13566334 atacaatgagggaaagcaagtctaccatgagtcccccaaccagacaacatcccatacgcaggaaagtcgttgatagtccacatcaaagccgccctca 13566238  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 23010292 - 23010182
Alignment:
Q  2 cctttgtttctttaatacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaa 101  Q
    ||||||||| ||  || ||||| |||||||| ||||| |||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||| |     
T  23010292 cctttgtttgttccatgcaatgtggacaagccaatcttccatgagtcgaccatcaagacaacattccatatgcaggaaagtcgttaatagtccacatcag 23010193  T
Q  102 aactgccctca 112  Q
    | |||||||||    
T  23010192 agctgccctca 23010182  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 14322305 - 14322223
Alignment:
Q  16 atacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacat 98  Q
    ||||||||||| ||||| | |||||||||||||  ||| ||| ||||||| ||||| |||||||||||||| |||||| ||||    
T  14322305 atacaatgagggcaagcaagtctaccatgagtcccccaaccagacaacatcccatacgcaggaaagtcgttgatagtccacat 14322223  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 23958923 - 23958827
Alignment:
Q  16 atacaatgaggacaagctaatctaccatgagtcgaccatccaaacaacatgccatatgcaggaaagtcgttaatagtcaacattaaaactgccctca 112  Q
    |||||| |||| ||||| | |||||||||||||  ||| ||||| ||||| ||||| |||||||| | ||| |||||| |||| ||| | |||||||    
T  23958923 atacaacgagggcaagcaagtctaccatgagtcccccaaccaaaaaacatcccatacgcaggaaatttgttgatagtccacatcaaagccgccctca 23958827  T

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