View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17389_low_20 (Length: 233)

Name: NF17389_low_20
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17389_low_20
NF17389_low_20
[»] chr3 (36 HSPs)
chr3 (18-233)||(4535159-4535366)
chr3 (36-123)||(10949724-10949811)
chr3 (34-123)||(5858196-5858285)
chr3 (36-122)||(27762471-27762557)
chr3 (36-122)||(47883326-47883412)
chr3 (39-123)||(47878598-47878682)
chr3 (18-123)||(20031776-20031883)
chr3 (36-122)||(11079169-11079255)
chr3 (41-123)||(54192896-54192978)
chr3 (34-123)||(10595453-10595542)
chr3 (18-98)||(48390646-48390727)
chr3 (39-123)||(16461852-16461936)
chr3 (18-122)||(22627591-22627695)
chr3 (39-122)||(29914401-29914484)
chr3 (39-122)||(29963554-29963637)
chr3 (34-121)||(54188160-54188247)
chr3 (18-123)||(35918382-35918487)
chr3 (37-122)||(51727458-51727543)
chr3 (37-121)||(29956218-29956302)
chr3 (37-121)||(30005373-30005457)
chr3 (40-123)||(10208448-10208531)
chr3 (38-123)||(4308734-4308819)
chr3 (37-122)||(43225827-43225912)
chr3 (40-123)||(10100539-10100622)
chr3 (37-122)||(9605065-9605150)
chr3 (48-125)||(10896652-10896729)
chr3 (39-123)||(10094515-10094599)
chr3 (39-123)||(10201401-10201485)
chr3 (48-123)||(25690819-25690894)
chr3 (57-123)||(10901397-10901463)
chr3 (37-122)||(27101712-27101797)
chr3 (34-98)||(10613221-10613285)
chr3 (43-119)||(38002494-38002570)
chr3 (48-122)||(45882659-45882733)
chr3 (72-122)||(6066241-6066291)
chr3 (72-124)||(25388616-25388668)
[»] chr8 (14 HSPs)
chr8 (18-122)||(23179987-23180091)
chr8 (18-123)||(21033519-21033624)
chr8 (34-123)||(29555229-29555318)
chr8 (36-119)||(3275955-3276038)
chr8 (34-122)||(9021550-9021638)
chr8 (39-123)||(4812935-4813019)
chr8 (39-123)||(25684295-25684379)
chr8 (39-123)||(590465-590549)
chr8 (39-123)||(28332283-28332367)
chr8 (39-122)||(16757693-16757776)
chr8 (39-122)||(28327561-28327644)
chr8 (39-123)||(28895152-28895236)
chr8 (39-123)||(16752969-16753053)
chr8 (37-114)||(22685120-22685197)
[»] chr5 (16 HSPs)
chr5 (18-123)||(40222413-40222518)
chr5 (18-122)||(42237954-42238058)
chr5 (18-122)||(2298424-2298528)
chr5 (37-123)||(6747043-6747129)
chr5 (37-122)||(1240078-1240163)
chr5 (39-123)||(35385879-35385963)
chr5 (36-117)||(17841736-17841816)
chr5 (38-122)||(10529554-10529638)
chr5 (21-125)||(22672501-22672605)
chr5 (39-123)||(25452145-25452229)
chr5 (37-122)||(6744801-6744886)
chr5 (39-122)||(25445219-25445302)
chr5 (37-120)||(39854226-39854309)
chr5 (37-123)||(4409796-4409882)
chr5 (39-116)||(1170470-1170547)
chr5 (74-123)||(34477584-34477633)
[»] chr6 (24 HSPs)
chr6 (21-122)||(26642829-26642930)
chr6 (21-122)||(26748795-26748896)
chr6 (34-125)||(17695294-17695385)
chr6 (37-123)||(26064755-26064841)
chr6 (37-123)||(26084724-26084810)
chr6 (38-123)||(1230683-1230768)
chr6 (41-122)||(13467955-13468036)
chr6 (39-123)||(13883127-13883211)
chr6 (38-122)||(25466347-25466431)
chr6 (39-123)||(31249160-31249244)
chr6 (39-123)||(35201772-35201856)
chr6 (39-122)||(26887671-26887754)
chr6 (39-122)||(30975145-30975228)
chr6 (39-122)||(30981584-30981667)
chr6 (39-122)||(30987748-30987831)
chr6 (39-123)||(13878379-13878463)
chr6 (39-123)||(35209007-35209091)
chr6 (39-109)||(25941330-25941400)
chr6 (50-122)||(28241788-28241860)
chr6 (39-122)||(16785572-16785655)
chr6 (37-123)||(22352301-22352387)
chr6 (48-123)||(15533146-15533221)
chr6 (48-118)||(22343261-22343331)
chr6 (76-123)||(33215498-33215545)
[»] chr4 (22 HSPs)
chr4 (18-123)||(4884530-4884635)
chr4 (36-122)||(25699401-25699487)
chr4 (34-122)||(16489001-16489089)
chr4 (18-124)||(18586614-18586720)
chr4 (34-123)||(15316629-15316718)
chr4 (34-123)||(31300073-31300162)
chr4 (18-122)||(8528918-8529022)
chr4 (42-123)||(7050722-7050803)
chr4 (38-123)||(15311993-15312078)
chr4 (34-118)||(15830817-15830901)
chr4 (34-122)||(40636868-40636956)
chr4 (36-123)||(4556499-4556586)
chr4 (39-122)||(11853202-11853285)
chr4 (37-122)||(6764654-6764739)
chr4 (37-118)||(8631877-8631958)
chr4 (37-120)||(2485308-2485390)
chr4 (36-76)||(4569751-4569791)
chr4 (18-122)||(16689369-16689472)
chr4 (48-122)||(47868195-47868269)
chr4 (88-123)||(4569722-4569757)
chr4 (48-122)||(16631068-16631142)
chr4 (70-122)||(26086240-26086292)
[»] chr1 (10 HSPs)
chr1 (41-122)||(25133681-25133762)
chr1 (34-122)||(21353769-21353857)
chr1 (39-122)||(9521367-9521450)
chr1 (38-123)||(2393728-2393813)
chr1 (18-123)||(2401622-2401727)
chr1 (40-123)||(9526116-9526199)
chr1 (37-123)||(2617279-2617365)
chr1 (39-123)||(2232261-2232345)
chr1 (51-122)||(23689313-23689384)
chr1 (74-122)||(51749778-51749826)
[»] chr7 (16 HSPs)
chr7 (34-122)||(34547285-34547373)
chr7 (34-122)||(44512969-44513057)
chr7 (36-122)||(44144352-44144438)
chr7 (34-123)||(7464941-7465030)
chr7 (34-123)||(8378861-8378950)
chr7 (34-123)||(30246641-30246730)
chr7 (39-123)||(7074439-7074523)
chr7 (34-122)||(25351005-25351093)
chr7 (34-122)||(25356699-25356787)
chr7 (39-123)||(25405045-25405129)
chr7 (39-122)||(7069433-7069516)
chr7 (50-116)||(25409809-25409875)
chr7 (39-116)||(3320496-3320573)
chr7 (37-120)||(40946076-40946159)
chr7 (36-122)||(42006316-42006402)
chr7 (39-116)||(3325244-3325321)
[»] chr2 (18 HSPs)
chr2 (34-123)||(20050466-20050555)
chr2 (34-123)||(30478665-30478754)
chr2 (36-123)||(37171197-37171284)
chr2 (36-123)||(38190648-38190735)
chr2 (34-123)||(27518063-27518152)
chr2 (34-122)||(12781663-12781751)
chr2 (39-123)||(22712943-22713027)
chr2 (34-122)||(35894683-35894771)
chr2 (48-123)||(17943209-17943284)
chr2 (38-123)||(2740593-2740678)
chr2 (39-123)||(2735857-2735941)
chr2 (34-122)||(20055212-20055300)
chr2 (39-123)||(22717673-22717757)
chr2 (39-123)||(39686635-39686719)
chr2 (39-122)||(39679698-39679781)
chr2 (39-122)||(17462088-17462171)
chr2 (39-122)||(33674853-33674936)
chr2 (39-122)||(45567062-45567145)
[»] scaffold1764 (1 HSPs)
scaffold1764 (38-123)||(1107-1192)
[»] scaffold0256 (1 HSPs)
scaffold0256 (43-122)||(15976-16055)
[»] scaffold0209 (1 HSPs)
scaffold0209 (39-123)||(17413-17497)
[»] scaffold0004 (1 HSPs)
scaffold0004 (34-122)||(188665-188753)
[»] scaffold0552 (1 HSPs)
scaffold0552 (37-122)||(1264-1349)
[»] scaffold0131 (1 HSPs)
scaffold0131 (39-120)||(30795-30876)
[»] scaffold0038 (1 HSPs)
scaffold0038 (50-122)||(41950-42022)
[»] scaffold0006 (1 HSPs)
scaffold0006 (39-98)||(224517-224576)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 4535366 - 4535159
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| |||||||||||||||||    
T  4535366 atttttccaatgaagatctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgatatgattctccagattcatgattttaagttaactc 4535267  T
Q  118 tcacaactggcatagttgttattaaactagactttgttgcacggagaaaagagttttattgtaatgttgtaatgttgtaaatcgtgatacaaaatactta 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||    
T  4535266 tcacaattggcatagttgttattaaactagactttgttgcacggagaaaagagttttattgtaatgtt--------gtaaatcgtgatacaaaatattta 4535175  T
Q  218 agatatgatgtaattc 233  Q
    ||||||||||||||||    
T  4535174 agatatgatgtaattc 4535159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 10949724 - 10949811
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||| |||||||||||||||||||||||    
T  10949724 tcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacgtttctccagattcctgattttaagttaactctcacaa 10949811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 5858285 - 5858196
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  5858285 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagattcctgattttaagttaactctcacaa 5858196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 27762471 - 27762557
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||| ||||||||||||||||||||||    
T  27762471 tcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacgtttcttcagattcctgattttaagttaactctcaca 27762557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 47883326 - 47883412
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||  ||||||| |||| ||||||||||||||||||||||    
T  47883326 tcaggatcttgtttcaacaatcgtgacacgttgcttctccatcgtggcacgtttctccaaattcctgattttaagttaactctcaca 47883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 47878598 - 47878682
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  47878598 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 47878682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 20031776 - 20031883
Alignment:
Q  18 atttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgctt-ctccatcgtgacacaattctccagattcttgattttaagttaac 115  Q
    ||||||||||||||  ||| |||||||||| ||||||||||||||||| |||||| |||||||||| |||  |||||||||||  |||||||||||||||    
T  20031776 atttttccagtgacttccttcagaatcttgcttcaacaatcgtggcacattgctttctccatcgtggcacgtttctccagatttctgattttaagttaac 20031875  T
Q  116 tctcacaa 123  Q
    ||||||||    
T  20031876 tctcacaa 20031883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 11079255 - 11079169
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||| |||  |||||||||||  ||||||||||||||||||||||    
T  11079255 tcaggatcttttttaaacaatcgtggcacgttgcttctccatcgtggcacgtttctccagattactgattttaagttaactctcaca 11079169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 54192978 - 54192896
Alignment:
Q  41 atcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  54192978 atcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 54192896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 10595453 - 10595542
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| |  || |||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  10595453 cctcagaatcttgcttcaacaatcgtggcgcaatgtttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 10595542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 48390646 - 48390727
Alignment:
Q  18 atttttccagtgacgacctc-agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagatt 98  Q
    ||||||||||||||  |||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  48390646 atttttccagtgacttcctccagaatcttgcttcaacaattgtggcacgttgcttctccatcgtgacacatttctccagatt 48390727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 16461936 - 16461852
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  16461936 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 16461852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 22627591 - 22627695
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||||||  |  ||||||||||||| |||||||||||||||  | ||||||||||||||| ||| || |||||||||  |||||||||||||||||    
T  22627591 atttttccagtagcttcctcagaatcttgcttcaacaatcgtggcgagatgcttctccatcgtggcacgatactccagatttctgattttaagttaactc 22627690  T
Q  118 tcaca 122  Q
    |||||    
T  22627691 tcaca 22627695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 29914401 - 29914484
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  29914401 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactcccaca 29914484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 29963554 - 29963637
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  29963554 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactcccaca 29963637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 54188247 - 54188160
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcac 121  Q
    |||||| |||||| ||||||||||||||| || ||||||||||||||| ||| ||||| ||||||  |||||||||||||||||||||    
T  54188247 cctcaggatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattcttcagatttctgattttaagttaactctcac 54188160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 35918382 - 35918487
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||||||||  ||  |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||| | |  |||||||||||||||||    
T  35918382 atttttccagtgattactccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccataattctgattttaagttaactc 35918481  T
Q  118 tcacaa 123  Q
    ||||||    
T  35918482 tcacaa 35918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 51727458 - 51727543
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  51727458 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 51727543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 29956302 - 29956218
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcac 121  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||||| ||| |||||| |  |||||||||||||||||||||    
T  29956302 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtgacacgattatccagaattctgattttaagttaactctcac 29956218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 30005457 - 30005373
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcac 121  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||||| ||| |||||| |  |||||||||||||||||||||    
T  30005457 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtgacacgattatccagaattctgattttaagttaactctcac 30005373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 10208448 - 10208531
Alignment:
Q  40 aatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  10208448 aatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 10208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 4308734 - 4308819
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||| ||| ||||||||||||||||||  |||||| ||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  4308734 agaattttgcttcaacaatcgtggcacgaagcttcttcatcgtggcacgattctccagaattctgattttaagttaactctcacaa 4308819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 43225912 - 43225827
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| |||||||||||| |||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  43225912 cagaattttgcttcaacaatcgtagcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 43225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 10100539 - 10100622
Alignment:
Q  40 aatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||| |||||| |||||||| || ||||||||||||||| ||| || ||| |||||  |||||||||||||||||||||||    
T  10100539 aatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactctagatttctgattttaagttaactctcacaa 10100622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 9605065 - 9605150
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| ||||||||||||||||||   ||||||||||||  ||| |||||||||| |  ||||||||||||||||||||||    
T  9605065 cagaattttgcttcaacaatcgtggcacgaaacttctccatcgtagcacgattctccagaattctgattttaagttaactctcaca 9605150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 10896729 - 10896652
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaact 125  Q
    |||| |||||||||| || ||||||||||||||| ||| || ||||| |||  |||||||||||||||||||||||||    
T  10896729 ttcagcaatcgtggcgcgatgcttctccatcgtggcacgatactccatatttctgattttaagttaactctcacaact 10896652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 10094515 - 10094599
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||| | || |||||||||||||||  || || |||||||||  |||||||||||||||||||||||    
T  10094515 gaatcttgcttcaaccatcgtgacgcgatgcttctccatcgtggaacgatactccagatttctgattttaagttaactctcacaa 10094599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 10201401 - 10201485
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || |||||||||||||||  || || |||||||||  |||||||||||||| ||||||||    
T  10201401 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggaacgatactccagatttctgattttaagttaaatctcacaa 10201485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 25690819 - 25690894
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||||||||  |||||||||||||| ||| ||||  |||| |  |||||||||||||||||||||||    
T  25690819 ttcaacaatcgtggcacgaagcttctccatcgtggcacgattcatcagaattctgattttaagttaactctcacaa 25690894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 10901463 - 10901397
Alignment:
Q  57 cgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  10901463 cgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 10901397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 27101712 - 27101797
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| |||||||||| ||||||    ||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  27101712 cagaattttgcttcaacaatcatggcacaaaacttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 27101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 10613221 - 10613285
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagatt 98  Q
    ||||||||||||| ||||||||||||||  || || |||||||||||| ||| ||||||||||||    
T  10613221 cctcagaatcttgcttcaacaatcgtggtgcgatgtttctccatcgtggcacgattctccagatt 10613285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 38002570 - 38002494
Alignment:
Q  43 cttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctc 119  Q
    |||| |||||||||| || || ||||||| |||||| ||||||  |||||||||||  |||||||||||||||||||    
T  38002570 cttgcttcaacaatcatgacatgttgcttatccatcatgacacgtttctccagattactgattttaagttaactctc 38002494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 45882733 - 45882659
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| |||||||||||||| |||||||||||| ||| | || | |||| || ||||||||||||||||||||||    
T  45882733 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 45882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 6066241 - 6066291
Alignment:
Q  72 ctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||||| ||||||||| ||||  | ||||||||||||||||||||||    
T  6066241 ctccatcgtgccacaattctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 25388668 - 25388616
Alignment:
Q  72 ctccatcgtgacacaattctccagattcttgattttaagttaactctcacaac 124  Q
    |||||||||| ||| ||||| ||||  | ||||||||||||||||||||||||    
T  25388668 ctccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaac 25388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 23179987 - 23180091
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||  ||| ||||||||||||| |||||||||||||||||    
T  23179987 atttttccagtgacgacctcagaatcttgtttcaacaatcatagcacgatgcttctccatcgtagcacgattctccagattcctgattttaagttaactc 23180086  T
Q  118 tcaca 122  Q
    |||||    
T  23180087 tcaca 23180091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 21033624 - 21033519
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    ||||||||||||||  | ||| || |||| |||||||||||||||||||||||||||||||||| ||| ||||||||| || | ||||||||||||||||    
T  21033624 atttttccagtgactgcttcacaaacttgcttcaacaatcgtggcacgttgcttctccatcgtggcacgattctccagtttttagattttaagttaactc 21033525  T
Q  118 tcacaa 123  Q
    ||||||    
T  21033524 tcacaa 21033519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 29555229 - 29555318
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||  ||| ||||||||||||  |||||||||||||||||||||||    
T  29555229 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtagcacgattctccagatttctgattttaagttaactctcacaa 29555318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 3276038 - 3275955
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctc 119  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| |||  |||||||||||  |||||||||||||||||||    
T  3276038 tcagaatcttgcttcaacaatcgtggcacattgcttctccatcgtggcacgtttctccagatttctgattttaagttaactctc 3275955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 9021550 - 9021638
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  9021550 cctcagaatcttgcttcaacaatcgtgacgcgatgcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 9021638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 4812935 - 4813019
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  4812935 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 4813019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 25684379 - 25684295
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  25684379 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaa 25684295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 590549 - 590465
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || |||||||  |||||| ||| || |||||||||  |||||||||||||||||||||||    
T  590549 gaatcttgcttcaacaatcgtggcgcgatgcttctttatcgtggcacgatactccagatttctgattttaagttaactctcacaa 590465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 28332367 - 28332283
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||| | |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  28332367 gaatcttgcttcagccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaa 28332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 16757693 - 16757776
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||| ||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  16757693 gaatcttgcttcaaccatcgtggcgcgatgcctctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 16757776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 28327644 - 28327561
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||| | |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  28327644 gaatcttgcttcagccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 28327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 28895236 - 28895152
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || ||||||| ||||||| ||| |||||||| | | || |||||||||||| ||||||||    
T  28895236 gaatcttgcttcaacaatcgtggcgcgatgcttctacatcgtggcacgattctccaaaatttttattttaagttaagtctcacaa 28895152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 16752969 - 16753053
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||| |||| |||||| ||| || |||||||||  |||||||||||||| ||||||||    
T  16752969 gaatcttgcttcaaccatcgtggcgcgatgcctctctatcgtggcacgatgctccagatttctgattttaagttaagtctcacaa 16753053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 22685120 - 22685197
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaa 114  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| ||||| |||| |  ||||||||||||||    
T  22685120 cagaattttggttcaacaatcgtggcacgaagcttcttcatcgtggcacgattcttcagaattctgattttaagttaa 22685197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 40222518 - 40222413
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||| |||||  | ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  40222518 atttttcctgtgactgcttcagaatcttgcttcaacaatcgtggcacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactc 40222419  T
Q  118 tcacaa 123  Q
    ||||||    
T  40222418 tcacaa 40222413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 42238058 - 42237954
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    ||||||||||||||  | ||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  42238058 atttttccagtgactgcttcaaaatcttgcttcaacaatcgtggcacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactc 42237959  T
Q  118 tcaca 122  Q
    |||||    
T  42237958 tcaca 42237954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 2298424 - 2298528
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||||||  |  ||||||||||||| ||||||| ||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||    
T  2298424 atttttccagtagcttcctcagaatcttgcttcaacagtcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactc 2298523  T
Q  118 tcaca 122  Q
    |||||    
T  2298524 tcaca 2298528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6747129 - 6747043
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  6747129 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 6747043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 1240163 - 1240078
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  1240163 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 1240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 35385879 - 35385963
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| || ||| |||||  |||||||||||||||||||||||    
T  35385879 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgatactctagatttctgattttaagttaactctcacaa 35385963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 17841736 - 17841816
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||||  |||||||||||| ||||||||| |||||||    
T  17841736 tcaggatcttgttt-aacaatcgtgacatgttgcttctccatcgtgacacgtttctccagattcctgattttaaattaactc 17841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 10529554 - 10529638
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||| ||| ||||||||||||||||||  ||||||| |||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  10529554 agaattttgcttcaacaatcgtggcacgaagcttctcgatcgtggcacgattctccagaattctgattttaagttaactctcaca 10529638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 22672605 - 22672501
Alignment:
Q  21 tttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||||| ||  ||||||||||||| ||||||||| ||||| |  ||||| ||||||||| ||| |||||||||| |  | ||||||||||||||||||    
T  22672605 tttccagtaactccctcagaatcttgcttcaacaattgtggcgcaatgcttttccatcgtggcacgattctccagaattctaattttaagttaactctca 22672506  T
Q  121 caact 125  Q
    |||||    
T  22672505 caact 22672501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 25452229 - 25452145
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||| |||||||||| || ||||||||||||||| ||| |||||||| |||  | |||||||||||||||||||||    
T  25452229 gaatcttgcttcatcaatcgtggcgcgatgcttctccatcgtggcacgattctccatatttctaattttaagttaactctcacaa 25452145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 6744886 - 6744801
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| ||||||||||||||||||  | |||||||||||| ||| |||||||||| |  ||||||||| ||||||||||||    
T  6744886 cagaattttgcttcaacaatcgtggcacgaagtttctccatcgtggcacgattctccagaattctgattttaaattaactctcaca 6744801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 25445302 - 25445219
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||| |||||||||| || |||||||||||| ||  || ||||||||||||  | ||||||||||||||||||||    
T  25445302 gaatcttgcttcatcaatcgtggcgcgatgcttctccatcatggtacgattctccagatttctaattttaagttaactctcaca 25445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 39854309 - 39854226
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||| ||| ||||||||||||||||||   |||||| ||| |||||| |||||||||| |  | ||||||||||||||||||    
T  39854309 cagaattttgcttcaacaatcgtggcacgaaacttctctatcatgacacgattctccagaattctaattttaagttaactctca 39854226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 4409882 - 4409796
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| ||||| ||||    |||||||||||||||| ||||||    
T  4409882 cagaattttgcttcaacaatcgtggcacgaagcttcttcatcgtggcacgattcttcagaactctgattttaagttaactttcacaa 4409796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 1170547 - 1170470
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaact 116  Q
    |||||||| |||| | || ||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||    
T  1170547 gaatcttgcttcagccattgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaact 1170470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 34477584 - 34477633
Alignment:
Q  74 ccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||| ||||| ||||  |||||||||||||||||||||||||    
T  34477584 ccatcgtgccacgattctgcagaaacttgattttaagttaactctcacaa 34477633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 26642930 - 26642829
Alignment:
Q  21 tttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||| ||||||||||||| |||  |||||||||||| ||||||||||||||||||||    
T  26642930 tttccagtgactgcttcagaatcttgtttcaacaatcgttgcacgttccttctccatcgtggcacgtttctccagattcctgattttaagttaactctca 26642831  T
Q  121 ca 122  Q
    ||    
T  26642830 ca 26642829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 26748896 - 26748795
Alignment:
Q  21 tttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||| ||||||||||||| |||  |||||||||||| ||||||||||||||||||||    
T  26748896 tttccagtgactgcttcagaatcttgtttcaacaatcgttgcacgttccttctccatcgtggcacgtttctccagattcctgattttaagttaactctca 26748797  T
Q  121 ca 122  Q
    ||    
T  26748796 ca 26748795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 17695294 - 17695385
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaact 125  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||||    
T  17695294 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaact 17695385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26064841 - 26064755
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  26064841 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 26064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26084810 - 26084724
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  26084810 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 26084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 1230683 - 1230768
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  1230683 agaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 1230768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 13467955 - 13468036
Alignment:
Q  41 atcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||||||||||||||||||||||||||||||||||  |   ||||||| |||| ||||||||||||||||||||||    
T  13467955 atcttgcttcaacaatcgtggcacgttgcttctccatcgtggtatgtttctccaaattcctgattttaagttaactctcaca 13468036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 13883211 - 13883127
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  13883211 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 13883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 25466347 - 25466431
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||| ||  |||||| |||||  ||||||||||||||||||||||    
T  25466347 agaatcttgcttcaacaattgtggcacgatgcttctccatcgtggcatgattctctagatttctgattttaagttaactctcaca 25466431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 31249160 - 31249244
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  31249160 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 31249244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 35201772 - 35201856
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  35201772 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 35201856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 26887671 - 26887754
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  26887671 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 26887754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 30975145 - 30975228
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  30975145 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 30975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 30981584 - 30981667
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  30981584 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 30981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 30987748 - 30987831
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  30987748 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 30987831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 13878463 - 13878379
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || |||||||||||| || ||| || |||||||||  |||||||||||||||||||||||    
T  13878463 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcatggcacgatgctccagatttctgattttaagttaactctcacaa 13878379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 35209007 - 35209091
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||| ||| ||| || |||||||||  |||||||||||||||||||||||    
T  35209007 gaatcttgcttcaaccatcgtggcgcgatgcttctccattgtggcacgatactccagatttctgattttaagttaactctcacaa 35209091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 25941400 - 25941330
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 109  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||    
T  25941400 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaa 25941330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 28241788 - 28241860
Alignment:
Q  50 caacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||||||  |||||||||||||| ||| ||||| |||| |  ||||||||||||||||||||||    
T  28241788 caacaatcgtggcacgaagcttctccatcgtggcacgattcttcagaattctgattttaagttaactctcaca 28241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 16785655 - 16785572
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||| || |||||| ||| || |||||||||  ||||||||||||||||||||||    
T  16785655 gaatcttgcttcaaccatcgtggcgcgatgcttttcgatcgtggcacgatgctccagatttctgattttaagttaactctcaca 16785572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 22352301 - 22352387
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||||  |||||||||| ||  ||| |||||| ||| | | ||||||||||||||||||||||    
T  22352301 cagaattttgattcaacaatcgtggcacgaagcttctccattgtagcacgattctctagaatttagattttaagttaactctcacaa 22352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 15533146 - 15533221
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||||||||||||||||||||||||||| ||| | ||||  ||| || |||||||||||||||||||||||    
T  15533146 ttcaaccatcgtggcacgttgcttctccatcgtggcacgatttctgtaga-tcctgattttaagttaactctcacaa 15533221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 22343261 - 22343331
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactct 118  Q
    ||||||||||||||||||  |||||||||||||| |   |||||||||| |  ||||||||||||||||||    
T  22343261 ttcaacaatcgtggcacgaagcttctccatcgtggcttgattctccagaattctgattttaagttaactct 22343331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 33215545 - 33215498
Alignment:
Q  76 atcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  33215545 atcgtggcacgattctccagatttctgattttaagttaactctcacaa 33215498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 4884635 - 4884530
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    ||||||||||||||  | | ||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  4884635 atttttccagtgactgctttagaatcttgcttcaacaatcgtgacacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactc 4884536  T
Q  118 tcacaa 123  Q
    ||||||    
T  4884535 tcacaa 4884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 25699487 - 25699401
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||| ||||||||||||||||||||||    
T  25699487 tcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacatttcttctgattcctgattttaagttaactctcaca 25699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 16489089 - 16489001
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16489089 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 16489001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 18586720 - 18586614
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||||||  |  ||||||||||||| ||||||||||||||  || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  18586720 atttttccagtagcttcctcagaatcttgcttcaacaatcgtggtgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactc 18586621  T
Q  118 tcacaac 124  Q
    |||||||    
T  18586620 tcacaac 18586614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 15316718 - 15316629
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  15316718 cctcagaatcttgcttcaacaatcgtgacgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 15316629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 31300162 - 31300073
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| |||||||||||||||  | ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  31300162 cctcagaatcttgcttcaacaatcgtggcgtgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 31300073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 8529022 - 8528918
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||||||||  |  ||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||    |||||||||||||||||    
T  8529022 atttttccagtagcttcctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtgacacgattctccagaaatctgattttaagttaactc 8528923  T
Q  118 tcaca 122  Q
    |||||    
T  8528922 tcaca 8528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 7050722 - 7050803
Alignment:
Q  42 tcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||||||||||||||||||||||| |||||| |||  |||||||||||| |||||||||| | ||||||||||    
T  7050722 tcttgtttcaacaatcgtggcacgttgcttctctatcgtggcacgtttctccagattcctgattttaagctgactctcacaa 7050803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 15312078 - 15311993
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||| ||||||||||||||  || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  15312078 agaatcttgcttcaacaatcgtggtgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 15311993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 15830901 - 15830817
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactct 118  Q
    ||||||||||||| |||||||||||||||  | ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||    
T  15830901 cctcagaatcttgcttcaacaatcgtggcgtgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactct 15830817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 40636956 - 40636868
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||| | |  ||||||||||||||||||||||    
T  40636956 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccaaaattctgattttaagttaactctcaca 40636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 4556499 - 4556586
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||   ||||||||||||||||||||||    
T  4556499 tcagaaacttatttcaacaatcgtggcatgttgcttctccatcgtggcacgattctccagttttcagattttaagttaactctcacaa 4556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 11853285 - 11853202
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  11853285 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 11853202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 6764739 - 6764654
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  6764739 cagaattttgcttcaacaatcgtggcacgaagcttctacatcgtggcacgattctccagaattctgattttaagttaactctcaca 6764654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 8631877 - 8631958
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactct 118  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||    
T  8631877 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactct 8631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 2485308 - 2485390
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| ||||||| || || ||||||||||||||||||||    
T  2485308 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctcctgaatc-tgattttaagttaactctca 2485390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 4569791 - 4569751
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctcca 76  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  4569791 tcaggatcttgtttcaacaatcgtggcacgttgcttctcca 4569751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 16689369 - 16689472
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    ||||||||||||||  | ||| || |||| ||||||||||| || |||  |||||||||||||| ||| ||||||||| ||   ||||||||||||||||    
T  16689369 atttttccagtgactgcttcaaaaacttgcttcaacaatcgcggaacga-gcttctccatcgtggcacgattctccagttttcagattttaagttaactc 16689467  T
Q  118 tcaca 122  Q
    |||||    
T  16689468 tcaca 16689472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 47868269 - 47868195
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||| ||| ||||  |||||| ||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  47868269 ttcaacaatggtgacacgaagcttcttcatcgtggcacgattctccagaattctgattttaagttaactctcaca 47868195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 4569757 - 4569722
Alignment:
Q  88 ttctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||||||| |||||||||||||||||||||||    
T  4569757 ttctccagattcctgattttaagttaactctcacaa 4569722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 16631142 - 16631068
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||||||||||||||||  |||||| ||| | || ||||||  | ||||||||||||||||||||||    
T  16631142 ttcaacaatcgtggcacgttgcttctgaatcgtggcacgatttttccaga-acctgattttaagttaactctcaca 16631068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 26086240 - 26086292
Alignment:
Q  70 ttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||||||| ||| |||||| ||| |  ||||||||||||||||||||||    
T  26086240 ttctccatcgtggcacgattctctagaattctgattttaagttaactctcaca 26086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 25133762 - 25133681
Alignment:
Q  41 atcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  25133762 atcttgcttcaacaatcgtggcacgttgcttctccatcgtgacacgtttctccagattcctgattttaagttaactctcaca 25133681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 21353769 - 21353857
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  21353769 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactcccaca 21353857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 9521450 - 9521367
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  9521450 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 9521367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 2393728 - 2393813
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||| |||||||||||||||  |  |||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  2393728 agaatcttgcttcaacaatcgtggcgtgaagcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 2393813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 2401622 - 2401727
Alignment:
Q  18 atttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactc 117  Q
    |||||| ||||||||| |  ||||||||| |||||||||||||||     |||||||||||||| ||| ||||||||||||  |||||||||||||||||    
T  2401622 attttttcagtgacgatcatagaatcttgcttcaacaatcgtggcgaaaagcttctccatcgtggcacgattctccagatttctgattttaagttaactc 2401721  T
Q  118 tcacaa 123  Q
    ||||||    
T  2401722 tcacaa 2401727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 9526199 - 9526116
Alignment:
Q  40 aatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  9526199 aatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaa 9526116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 2617365 - 2617279
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||| ||| ||||||||||||||||||   ||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  2617365 cagaattttgcttcaacaatcgtggcacgaaacttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 2617279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 2232345 - 2232261
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||  || |||||||||  |||||||||||||||||||||||    
T  2232345 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcatgatgctccagatttctgattttaagttaactctcacaa 2232261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 23689313 - 23689384
Alignment:
Q  51 aacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||||||| || ||||||||||||||| ||  |||||| ||||| |||||||||||||||||||||||    
T  23689313 aacaatcgtggcgcgatgcttctccatcgtggcatgattctctagatttttgattttaagttaactctcaca 23689384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 51749826 - 51749778
Alignment:
Q  74 ccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| ||| ||||| ||||  ||||||||||||||||||||||||    
T  51749826 ccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 34547285 - 34547373
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  34547285 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtgacacgattctccagatttctgattttaagttaactctcaca 34547373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 44512969 - 44513057
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  44512969 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacaattctccagaattttgattttaagttaactctcaca 44513057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 44144352 - 44144438
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||  ||||| |||||| ||||||||||||||||||||||    
T  44144352 tcaggatcttgtttcaacaatcgtggcacgttgtttctccatcgtggcacgtttctctagattcctgattttaagttaactctcaca 44144438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 7464941 - 7465030
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  7464941 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 7465030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 8378861 - 8378950
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||| |||  |||||||||||||||||||||||    
T  8378861 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccaaatttctgattttaagttaactctcacaa 8378950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 30246730 - 30246641
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| |  ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  30246730 cctcagaatcttgcttcaacaatcgtggcgcaatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 30246641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 7074523 - 7074439
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| ||||||||||| ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  7074523 gaatcttgcttcaaccatcgtggcacgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 7074439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 25351093 - 25351005
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| |||||| | |||||||||||||||| ||||||||||||||| ||| |||||||| |||  ||||||||||||||||| ||||    
T  25351093 cctcaggatcttgctccaacaatcgtggcacgatgcttctccatcgtggcacgattctccaaatttctgattttaagttaactcccaca 25351005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 25356787 - 25356699
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| |||||| | |||||||||||||||| ||||||||||||||| ||| |||||||| |||  ||||||||||||||||| ||||    
T  25356787 cctcaggatcttgctccaacaatcgtggcacgatgcttctccatcgtggcacgattctccaaatttctgattttaagttaactcccaca 25356699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 25405129 - 25405045
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  25405129 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 25405045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 7069516 - 7069433
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  7069516 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 7069433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 25409875 - 25409809
Alignment:
Q  50 caacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaact 116  Q
    ||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||    
T  25409875 caacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaact 25409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 3320496 - 3320573
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaact 116  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||    
T  3320496 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaact 3320573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 40946159 - 40946076
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| ||||| |||| |  ||||||||||||||||||||    
T  40946159 cagaattttgcttcaacaatcgtggcacgaagcttcttcatcgtggcacgattcttcagaattctgattttaagttaactctca 40946076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 42006402 - 42006316
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcaca 122  Q
    |||| |||||||||||| |||||||||||||| |||||||| ||||| || | ||||||| |  | ||||||||||||||||||||||    
T  42006402 tcaggatcttgtttcaataatcgtggcacgttacttctccaacgtgagacgatttctcca-aaacctgattttaagttaactctcaca 42006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 3325244 - 3325321
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaact 116  Q
    |||||||| |||||| |||||||  || ||||||||||||||| ||| || || ||||||  ||||||||||||||||    
T  3325244 gaatcttgcttcaaccatcgtggtgcgatgcttctccatcgtggcacgatgcttcagatttctgattttaagttaact 3325321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 20050466 - 20050555
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  20050466 cctcagaatcttgctgcaacaatcgtggcacgatgcttctccatcgtggcacgattctccagaattttgattttaagttaactctcacaa 20050555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 30478754 - 30478665
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  30478754 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 30478665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 37171197 - 37171284
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||||| | |||||||||||||||||||||    
T  37171197 tcaggatcttgtttcaacaatcatggcacgttgcttctccatcgtggcacgtttctccagattccttattttaagttaactctcacaa 37171284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 38190735 - 38190648
Alignment:
Q  36 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||| ||||||||| |||||||||||||    
T  38190735 tcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacgtttctccatattcctgattttaaattaactctcacaa 38190648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 27518063 - 27518152
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||| ||||| ||||||||| || ||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  27518063 cctcagaatcttgcttcaaaaatcgtggcgcgatgcttctccatcgtggcacgattctccagaattttgattttaagttaactctcacaa 27518152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 12781663 - 12781751
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||    
T  12781663 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattatccagatttctgattttaagttaactctcaca 12781751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 22712943 - 22713027
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  22712943 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 22713027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 35894683 - 35894771
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||   ||||||||||||| |  ||||||||||||||||||||||    
T  35894683 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtagtacaattctccagaattctgattttaagttaactctcaca 35894771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 17943284 - 17943209
Alignment:
Q  48 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  17943284 ttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 17943209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 2740678 - 2740593
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  2740678 agaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 2740593  T

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Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 2735941 - 2735857
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  2735941 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 2735857  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 20055212 - 20055300
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||| ||||||||||||||  || ||||||||||||||| ||  |||||||||| |  ||||||||||||||||||||||    
T  20055212 cctcagaatcttgcttcaacaatcgtggtgcgatgcttctccatcgtggcatgattctccagaattctgattttaagttaactctcaca 20055300  T

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Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 22717673 - 22717757
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| || || ||||||  |||||||||||||||||||||||    
T  22717673 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgatacttcagatttctgattttaagttaactctcacaa 22717757  T

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Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 39686719 - 39686635
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  39686719 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaa 39686635  T

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Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 39679781 - 39679698
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  39679781 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 39679698  T

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Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 17462171 - 17462088
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||| | |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  17462171 gaatcttgcttcatccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 17462088  T

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Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 33674853 - 33674936
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||  ||||||||||||||| || | ||||||||||||| ||| |||||| |||||  ||||||||||||||||||||||    
T  33674853 gaatcttacttcaacaatcgtggcgcgatacttctccatcgtggcacgattctctagatttctgattttaagttaactctcaca 33674936  T

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Target: chr2; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 45567145 - 45567062
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||| ||||||    
T  45567145 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaacgctcaca 45567062  T

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Target: scaffold1764 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 1192 - 1107
Alignment:
Q  38 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    ||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  1192 agaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 1107  T

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Target: scaffold0256 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 16055 - 15976
Alignment:
Q  43 cttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16055 cttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 15976  T

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Target: scaffold0209 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 17413 - 17497
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 123  Q
    |||||||| ||||||||||||||| || |||||||| |||||| ||| || |||||||||  |||||||||||||||||||||||    
T  17413 gaatcttgcttcaacaatcgtggcgcgatgcttctctatcgtggcacgatactccagatttctgattttaagttaactctcacaa 17497  T

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Target: scaffold0004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 188665 - 188753
Alignment:
Q  34 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||| ||||||| ||||||||||||||| || ||||||||||||||  ||| ||||||||||||  | ||||||||||||||||||||    
T  188665 cctcataatcttgcttcaacaatcgtggcgcgatgcttctccatcgtagcacgattctccagatttctaattttaagttaactctcaca 188753  T

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Target: scaffold0552 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 1264 - 1349
Alignment:
Q  37 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  1264 cagaattttgcttcaacaatcgtggcacgaagcttctacatcgtggcacgattctccagaattctgattttaagttaactctcaca 1349  T

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Target: scaffold0131 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 30876 - 30795
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 120  Q
    |||||||| |||||| ||| |||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||    
T  30876 gaatcttgcttcaaccatcctggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctca 30795  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 41950 - 42022
Alignment:
Q  50 caacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 122  Q
    ||||||||||||||||  |||||||||||||| ||| ||||| |||| |  ||||||||||||||||||||||    
T  41950 caacaatcgtggcacgaagcttctccatcgtggcacgattcttcagaattctgattttaagttaactctcaca 42022  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 224576 - 224517
Alignment:
Q  39 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagatt 98  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||    
T  224576 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatt 224517  T

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