View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17389_low_4 (Length: 547)
Name: NF17389_low_4
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 4535023 - 4534762
Alignment:
| Q |
17 |
aatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaatgaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4535023 |
aatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaatgaat |
4534924 |
T |
|
| Q |
117 |
ggaactatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtccatca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4534923 |
ggaactatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtctgtca |
4534824 |
T |
|
| Q |
217 |
tcgacgtcattctgctggggtttccagcgagatcaataccgttattaaaagcaacctacaga |
278 |
Q |
| |
|
|| |||||||||||| || |||||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4534823 |
tcaacgtcattctgcaggagtttcctgcgagatcaatacggtgattaaaagcaacctacaga |
4534762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 368 - 487
Target Start/End: Complemental strand, 4534672 - 4534551
Alignment:
| Q |
368 |
tataatcatcttactgaccactgtttatacatcaaaaagaagaaa--gcagttcctttatttgtaagcttatgcatccaataataagatgaacattctct |
465 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4534672 |
tataatcatcttattaaccactgtttatgcatcaaaaaaaaaaaaaagcagttcctttatttgtaagcttatacatccaataataagatgaacattctct |
4534573 |
T |
|
| Q |
466 |
atctcaccaaggtaatggactg |
487 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
4534572 |
atctcaccaaggtaatgaactg |
4534551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 519
Target Start/End: Complemental strand, 4398789 - 4398754
Alignment:
| Q |
484 |
actgagttatgatcatcttccgtcgtttctgaaaaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398789 |
actgagttatgatcatcttccgtcgtttctgaaaaa |
4398754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 526
Target Start/End: Original strand, 4529104 - 4529146
Alignment:
| Q |
484 |
actgagttatgatcatcttccgtcgtttctgaaaaaatgtttt |
526 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4529104 |
actgagttatgatcatcttccatcgtttctaaaaaaatgtttt |
4529146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 519
Target Start/End: Original strand, 4497853 - 4497888
Alignment:
| Q |
484 |
actgagttatgatcatcttccgtcgtttctgaaaaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4497853 |
actgagttatgatcatcttccgtcgtttctaaaaaa |
4497888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 24061896 - 24062043
Alignment:
| Q |
17 |
aatattacatagataaaagagaaactaatcaaaaaa-gttcttctcaacaatagattaaaaatctcttgat-gattcaaatgtcactacaaaagaaatga |
114 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| ||| || ||||||||||||| || |||||||||| | | |||||| ||||| ||||||||||| |
|
|
| T |
24061896 |
aatattacataaataaacgataaactaataaaaaaaagtttttttcaacaatagattcaacatctcttgatggctccaaatgccactaaaaaagaaatga |
24061995 |
T |
|
| Q |
115 |
atgg-aactatcaatgaatataaattcagattttttataaataaaatt |
161 |
Q |
| |
|
|||| || ||| |||||||||||||| | |||| | ||||||||||| |
|
|
| T |
24061996 |
atggaaaatattaatgaatataaatttatatttctagtaaataaaatt |
24062043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 519
Target Start/End: Original strand, 18046537 - 18046572
Alignment:
| Q |
484 |
actgagttatgatcatcttccgtcgtttctgaaaaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18046537 |
actgagttatgatcatcttccgtcgtttctgaaaaa |
18046572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 3975751 - 3975660
Alignment:
| Q |
28 |
gataaaagagaaactaatcaaaaaagtt-cttctcaacaatagattaaaaatctcttgatga-ttcaaatgtcactacaaaagaaatgaatg |
117 |
Q |
| |
|
||||||||| ||| || |||||||| || ||||||||||||||||| || |||||||||| | | |||| | ||||||||||||||||||| |
|
|
| T |
3975751 |
gataaaagataaagtagtcaaaaaaattacttctcaacaatagattcaacatctcttgataactccaaagttaactacaaaagaaatgaatg |
3975660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 48867420 - 48867392
Alignment:
| Q |
17 |
aatattacatagataaaagagaaactaat |
45 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48867420 |
aatattacatagataaaagagaaactaat |
48867392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University