View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17389_low_7 (Length: 346)
Name: NF17389_low_7
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 47826638 - 47826330
Alignment:
| Q |
17 |
ataataataaacaaactaatttacctgattctccgcaagtcccatctgaatgattcccgtgggattatgaattgggtgatagggattcttctcgtactct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826638 |
ataataataaacaaactaatttacctgattctccgcaagtcccatctgaatgattcccgtgggattatgaattgggtgatagggattcttctcgtactct |
47826539 |
T |
|
| Q |
117 |
tgccatcctaggaagtaagaagagtcttggccatgagagtcttcactagccttcctagacaacatgttttctaattaatgtataataccaaatacaaaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
47826538 |
tgccatcctaggaagtaagaagagtcttggccatgagagtcttcactagccttcctagacaacatgttttctaattaatgtattataccaaata----ca |
47826443 |
T |
|
| Q |
217 |
aatttgcacaatgattaaatcaaattgtgtaagcaattgaactcgagaaatcaaagagtgaaattaagacagggttttagagcaatgatgtggaagacta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826442 |
aatttgcacaatgattaaatcaaattgtgtaagcaattgaactcgagaaatcaaagagtgaaattaagacagggttttagagcaatgatgtggaagacta |
47826343 |
T |
|
| Q |
317 |
tagagatgtgatg |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47826342 |
tagagatgtgatg |
47826330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 40207099 - 40207046
Alignment:
| Q |
99 |
ggattcttctcgtactcttgccatcctaggaagtaagaagagtcttggccatga |
152 |
Q |
| |
|
||||| |||||||| |||| |||||||| |||||| || ||||||||||||||| |
|
|
| T |
40207099 |
ggatttttctcgtattcttcccatcctaagaagtatgaggagtcttggccatga |
40207046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University