View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1738_high_1 (Length: 263)
Name: NF1738_high_1
Description: NF1738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1738_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 19747230 - 19747461
Alignment:
| Q |
15 |
ggaaagtccctaattcttcagatattgttctcgtggcaggattccataaacaaaaccagtattttgtatacttcctatggagagaatggaaaatcaagca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19747230 |
ggaaagtccctaattcttcagatattgttctcgtggcaggattccataaacaaaaccagtattttgtatacttcctatggagagaatggaaaatcaagca |
19747329 |
T |
|
| Q |
115 |
aaacaatccattgcaggaaccaacaacctgacaagtatcattcgaatcatgtaaattgtcaccaaaaacagtatttgaaggattctcgagtaaacgactc |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19747330 |
aaacaatccattgcaggaaccaataacctgacaagtgtcattcaaatcatggaaattgtcaccaaaaacagtgattgaaggattctcgagtaaacgactc |
19747429 |
T |
|
| Q |
215 |
acggggaaggactctacactactgataggata |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19747430 |
acggggaaggactctacactactgataggata |
19747461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 23086190 - 23086043
Alignment:
| Q |
96 |
gagaatggaaaatcaagcaaaacaatccattgcaggaaccaacaacctgacaagtatcattcgaatcatgtaaattgtcaccaaaaacagtatttgaagg |
195 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| ||||| || || | || |||| |||||||||| ||||| | | |||| |
|
|
| T |
23086190 |
gagaatggaaaagcaagcaaagcaatccattgcaggaaccaacaacatgacatgtgtcctctgatccatggcaattgtcaccggaaacaatgatcgaaga |
23086091 |
T |
|
| Q |
196 |
attctcgagtaaacgactcacggggaaggactctacactactgatagg |
243 |
Q |
| |
|
||||||||||||||||||||| | |||||| || ||| |||||||||| |
|
|
| T |
23086090 |
attctcgagtaaacgactcacagagaaggattcgacattactgatagg |
23086043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 10554167 - 10554203
Alignment:
| Q |
106 |
aatcaagcaaaacaatccattgcaggaaccaacaacc |
142 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10554167 |
aatcaagcacaacaatccattgcatgaaccaacaacc |
10554203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 10571897 - 10571933
Alignment:
| Q |
106 |
aatcaagcaaaacaatccattgcaggaaccaacaacc |
142 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10571897 |
aatcaagcacaacaatccattgcatgaaccaacaacc |
10571933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University