View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739-Insertion-1 (Length: 671)
Name: NF1739-Insertion-1
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 7 - 671
Target Start/End: Complemental strand, 4776378 - 4775714
Alignment:
| Q |
7 |
accaagaccggcttatttcttacacaacatcattacatcaaagatattctccttcgtgcaaacatgggtgattgcaaacctgtgtctactcccatggcca |
106 |
Q |
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|||| ||| |||||||||||||||||| ||||| |||| | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
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| T |
4776378 |
accaggactggcttatttcttacacaagatcatcacataagagatattctccttcgagcaaacatgggcgactgcaaacctgtgtctactcccatggcca |
4776279 |
T |
|
| Q |
107 |
cctcattctgctcacaacctaaacctgactccacatactgtgatagtaaggaatttcgcagtatacttggtgccttacattacctttcaatcacacgccc |
206 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
4776278 |
cctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcactcgccc |
4776179 |
T |
|
| Q |
207 |
ggacatagcattcccggtgaataaactagcacaacaaatgcaagctcctactgtgacagatatgcaagccttaaatagagtattgcgctatctcaaatcc |
306 |
Q |
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| T |
4776178 |
agacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatcc |
4776079 |
T |
|
| Q |
307 |
accatctccaatggactccatctcacgagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcga |
406 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | |
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| T |
4776078 |
accatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaa |
4775979 |
T |
|
| Q |
407 |
caggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgtac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
4775978 |
caggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtac |
4775879 |
T |
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| Q |
507 |
tatagcagccactactcaagagttaatatgggttcaaaatttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattgga |
606 |
Q |
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| T |
4775878 |
tatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattgga |
4775779 |
T |
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| Q |
607 |
gctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatca |
671 |
Q |
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| T |
4775778 |
gctacatatctatgtgcaaaccctgtctttcactctaggatgaagcatattgccatagattatca |
4775714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 346 - 671
Target Start/End: Complemental strand, 43061400 - 43061075
Alignment:
| Q |
346 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatct |
445 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
446 |
cttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagagttaatatgggttcaaaa |
545 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
546 |
tttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattggagctacatatctatgtgcaaacccagtttttcactctagg |
645 |
Q |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttcactatagg |
43061101 |
T |
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| Q |
646 |
atgaaagatattgccatagattatca |
671 |
Q |
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|||||| | ||||||||||||||||| |
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| T |
43061100 |
atgaaacacattgccatagattatca |
43061075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 651
Target Start/End: Original strand, 45192874 - 45192927
Alignment:
| Q |
598 |
aacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaa |
651 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttcactctcggatgaaa |
45192927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 671
Target Start/End: Original strand, 25450346 - 25450425
Alignment:
| Q |
592 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatca |
671 |
Q |
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||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| ||||||||||| |
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| T |
25450346 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatca |
25450425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 671
Target Start/End: Complemental strand, 2607367 - 2607288
Alignment:
| Q |
592 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatca |
671 |
Q |
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||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| ||||||||||| |
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| T |
2607367 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatca |
2607288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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