View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739-Insertion-10 (Length: 539)
Name: NF1739-Insertion-10
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-10 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 28385685 - 28386211
Alignment:
| Q |
13 |
aaccacattgtttaatttgttaagtcaatgacaaataatttgaattagttctttaaacatttaattagttatccaaggaagtcaaaagctggccttatga |
112 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385685 |
aaccacattgtttaatttcttaattcaatgacaaataattttaattacttctttaaacatttaattagttatccaaggaagtcaaaagctggccttatga |
28385784 |
T |
|
| Q |
113 |
ttttcctaaatcacaagattattttccacctaatcaaagaggagcagtatttggaagattactagtccaagattggtacattttaatatctttgttacac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385785 |
ttttcctaaatcacaagattattttccacctaatcaacgaggagcagtatttggaagattactagtccaagattggtacattttaatatctttgttacac |
28385884 |
T |
|
| Q |
213 |
ttctatctacattatattctttaatttcataagattaaacaatataaacatccatttaatgttccttcatttccttgcttctaaaggtacttgcaaggag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385885 |
ttctatctacattatattctttaatttcataagattaaacaatataaacatccatttaatgttccttcatttccttgcttctaaaggtacttgcaaggag |
28385984 |
T |
|
| Q |
313 |
ggaaatttcagggtactaatgcttatgtgggtctagctttgcctggagatgcaggatcatggcaaagagaaagcaaggtatgtagtaattaagctgtttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385985 |
ggaaatttcagggtactaatgcttatgtgggtctagctttgcctggagatgcaggatcatggcaaagagaaagcaaggtatgtagtaattaagctgtttt |
28386084 |
T |
|
| Q |
413 |
tcatataagttgtaagctatattcattgaaaaacttattccaataagttgatgtataaactatttttatcacagggatatcaattttggactcgatctga |
512 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28386085 |
tcatataagttgtaagctattttcattgaaaaatttattccaataagttgatgtataaactatttttatcacagggatatcaattttggactcgatctga |
28386184 |
T |
|
| Q |
513 |
cgccaagggatactttaaaataaacaa |
539 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28386185 |
cgccaagggatactttaaaataaacaa |
28386211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 28410420 - 28410039
Alignment:
| Q |
8 |
acactaaccacattgtttaatttgttaagtcaatgacaaataatttgaattagttctttaaacatttaattagttatccaaggaagtcaaaagctggcct |
107 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||| ||||||| |||||||||||| |||| |||||| |
|
|
| T |
28410420 |
acaccaaccacattgtttaatttcctaagtcaatgacaaataattttaataaattctttaaacatttgattagttttccaaggaagtccaaagttggcct |
28410321 |
T |
|
| Q |
108 |
tatgattttcctaaatcacaagattattttccacctaatcaaagaggagcagtatttggaagattactagtccaagattggtacattttaatatctttgt |
207 |
Q |
| |
|
|||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28410320 |
tatgattttcctcaatcaaaagactactttccacctaatcaaagaggagcagtatttggaagattactagtccaagattggtacattttaatatc-ttgt |
28410222 |
T |
|
| Q |
208 |
tacacttctatctacattatattctttaatttcataagattaaacaatataaacatccattta--atgttccttcatttccttgcttctaaaggtacttg |
305 |
Q |
| |
|
| ||| || || |||| |||| ||||||||||| || ||||| || || |||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
28410221 |
catact------tagatattattttttactttcataagatcaagcaata-gaatatacatttaatatgttccttcatttccttgcaattctaggtacttc |
28410129 |
T |
|
| Q |
306 |
caaggagggaaatttcagggtac---taatgcttatgtgggtctagctttgcctggagatgcaggatcatggcaaagagaaagcaaggta |
392 |
Q |
| |
|
||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28410128 |
aaaggaggaagatttcaatatactaataatgcttatgtgggtctagctttgcctggagatgcaggatcatggcaaacagaaagcaaggta |
28410039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 392
Target Start/End: Original strand, 28394030 - 28394419
Alignment:
| Q |
8 |
acactaaccacattgtttaatttgttaagtcaatgacaaataatttg-aattagttctttaaacatttaattagttatccaaggaagtcaaaagctggcc |
106 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
28394030 |
acaccaaccacattgtttaatttcttaaatcaatgacaaataatttttaattacttctttaaacatttaattagttatccaaggaagtccaaagttggcc |
28394129 |
T |
|
| Q |
107 |
ttatgattttcctaaatcacaagattattttccacctaatcaaagaggagcagtatttggaagattactagtccaagattggtacattttaatatctttg |
206 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28394130 |
ttatgattttcctcaatcacaagattactttccacctaatcaaaggggagcagtatttggaagattactagtccaagattggtacattttaatatc-ttg |
28394228 |
T |
|
| Q |
207 |
ttacacttctatctacattatattctttaatttcataagattaaacaatataaacatccattta--atgttccttcatttccttgcttctaaaggtactt |
304 |
Q |
| |
|
|| ||| || || || ||||||||| || |||||||| || ||| |||| | |||||| ||||| |||||||| || | | |||||||| |
|
|
| T |
28394229 |
ttgtactagtacttagatattattctttagttccataagatcaagcaacataatactgcatttaatatgttacttcattttctggaagttccaggtactt |
28394328 |
T |
|
| Q |
305 |
gcaaggagggaaatttc---agggtactaatgcttatgtgggtctagctttgcctggagatgcaggatcatggcaaagagaaagcaaggta |
392 |
Q |
| |
|
||||||| | || || | | || |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
28394329 |
cgaaggaggaagatatcaatatgctaataatgcttatgtgggtctagctttgcctggagatgctggatcatggcagagagaaagcaaggta |
28394419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 28409610 - 28409556
Alignment:
| Q |
481 |
tcacagggatatcaattttggactcgatctgacgccaagggatactttaaaataa |
535 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
28409610 |
tcacagggctatcaattttggactcgagctaacgccaaaggatactttaaaataa |
28409556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 28394511 - 28394561
Alignment:
| Q |
485 |
agggatatcaattttggactcgatctgacgccaagggatactttaaaataa |
535 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
28394511 |
agggctatcaattttggactcaaactgatgccaagggatactttaaaataa |
28394561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 13369134 - 13369184
Alignment:
| Q |
342 |
ggtctagctttgcctggagatgcaggatcatggcaaagagaaagcaaggta |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
13369134 |
ggtctagctttgcctggggatgcaggatcatggcagagagaaagcaaggta |
13369184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University