View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739-Insertion-11 (Length: 804)

Name: NF1739-Insertion-11
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739-Insertion-11
NF1739-Insertion-11
[»] chr3 (6 HSPs)
chr3 (30-529)||(50060932-50061432)
chr3 (17-169)||(50056804-50056954)
chr3 (35-139)||(28095993-28096098)
chr3 (157-231)||(45841587-45841660)
chr3 (535-570)||(28831710-28831745)
chr3 (327-396)||(11013426-11013495)
[»] scaffold0118 (2 HSPs)
scaffold0118 (17-529)||(18421-18926)
scaffold0118 (19-80)||(18936-18995)
[»] chr1 (8 HSPs)
chr1 (122-529)||(52986170-52986576)
chr1 (157-529)||(2414805-2415180)
chr1 (16-170)||(1286168-1286322)
chr1 (338-527)||(27203845-27204034)
chr1 (211-452)||(52673224-52673465)
chr1 (129-276)||(27203531-27203679)
chr1 (211-344)||(27203684-27203817)
chr1 (48-85)||(2410223-2410260)
[»] chr2 (5 HSPs)
chr2 (157-529)||(41898579-41898952)
chr2 (17-169)||(38500130-38500283)
chr2 (17-169)||(17508759-17508909)
chr2 (17-169)||(25476376-25476529)
chr2 (529-567)||(1643074-1643112)
[»] chr6 (2 HSPs)
chr6 (157-524)||(7812634-7813002)
chr6 (535-570)||(26330991-26331026)
[»] scaffold0245 (1 HSPs)
scaffold0245 (16-170)||(12435-12589)
[»] scaffold0057 (2 HSPs)
scaffold0057 (140-446)||(29227-29523)
scaffold0057 (339-519)||(49667-49846)
[»] chr8 (6 HSPs)
chr8 (17-169)||(44420550-44420700)
chr8 (17-171)||(16985658-16985812)
chr8 (17-169)||(10711880-10712038)
chr8 (139-271)||(1424921-1425052)
chr8 (121-169)||(32749483-32749531)
chr8 (159-204)||(30996884-30996930)
[»] chr4 (4 HSPs)
chr4 (17-169)||(11393060-11393210)
chr4 (17-169)||(11402787-11402937)
chr4 (529-566)||(5982210-5982247)
chr4 (16-98)||(40361087-40361167)
[»] chr7 (4 HSPs)
chr7 (384-524)||(3008692-3008832)
chr7 (17-101)||(29443615-29443697)
chr7 (192-312)||(39895409-39895527)
chr7 (109-174)||(39364466-39364531)
[»] scaffold0181 (1 HSPs)
scaffold0181 (38-172)||(14385-14521)
[»] chr5 (3 HSPs)
chr5 (339-518)||(4464051-4464229)
chr5 (200-316)||(4463923-4464038)
chr5 (48-85)||(2737990-2738027)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 529
Target Start/End: Complemental strand, 50061432 - 50060932
Alignment:
Q  30 tatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaacgggccaattaca 129  Q
    |||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||  |||||||||| | | |||||||||||||  ||||||||| |    
T  50061432 tatattatatttcagagataaataatgtagaacgactaatgtgtttatataggctattctaacctaatgggcctgactaatgactaataggccaattata 50061333  T
Q  130 aattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaa 228  Q
    |||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  50061332 aattactactgataatagtaaaacttcactatttacaacactccccctcaagctggtgaatgaatatctatcattcccagcttggaaacaattctttcaa 50061233  T
Q  229 agtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatctaatttttatttgat 328  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||||    
T  50061232 agtttttgttgttcagtcccttagttagaagatctgcaagattgccttgggaagagatatatggagtgcaaattagaccactatctaatttttccttgat 50061133  T
Q  329 gaagtgtcggtcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggt 428  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| || ||    
T  50061132 gaagtgtcggtcaacttcaatatgtttggttctatcatgttgcactggattatgagctatgctaatagcagatttattatcacaataaagtctcgttcgt 50061033  T
Q  429 tcatcactctttatcctcaagtcttccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaacactagatc 528  Q
    ||||| ||||||| ||||||||||||||| |||||||||| |||||  |  | ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  50061032 tcatcgctctttaccctcaagtcttccagtatgcttttcagccatagcaactcacatatcccttgtgccattgccctgaactctgcttcagcactagatc 50060933  T
Q  529 t 529  Q
    |    
T  50060932 t 50060932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 50056954 - 50056804
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    ||||||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||  |||||||||| | | ||||||| |||||    
T  50056954 tgtgaaaactgaatat--tatatttcagagataaataatgtacaaccactaatgtgtttatataggctattctaacctaatgggcctgactaataactaa 50056857  T
Q  117 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
      ||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  50056856 taggccaattacaaattactactgataatagtaaaacttcactatttacaaca 50056804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 28095993 - 28096098
Alignment:
Q  35 tatattttagagataaa-taatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaacgggccaattacaaatt 133  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||| |||||  |||||||||| | | ||||||||||||| |||  |||||||||||    
T  28095993 tatatttcagagataaaataatttacaaccactaatgtgtttatataagctattctaacctaatgggcctgactaatgactaatgggataattacaaatt 28096092  T
Q  134 actaat 139  Q
    ||||||    
T  28096093 actaat 28096098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 45841587 - 45841660
Alignment:
Q  157 actatttacaacacttcccctcaagctggtgaatg-atatctatcattcccagactggaaacaattctttcaaagt 231  Q
    ||||||||||||||| ||||||||| |||||  || |||||||||| ||||||  |||||||||| ||||||||||    
T  45841587 actatttacaacactccccctcaagatggtg--tgaatatctatcactcccagcttggaaacaatcctttcaaagt 45841660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 570
Target Start/End: Complemental strand, 28831745 - 28831710
Alignment:
Q  535 tatttttgttgatttgtatatgtgattttgattgtt 570  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28831745 tatttttattgatttgtatatgtgattttgattgtt 28831710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 11013495 - 11013426
Alignment:
Q  327 atgaagtgtcggtcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatag 396  Q
    ||||| |||||  ||| |||||||||||| ||||| |||||||| | ||| || ||||||||||||||||    
T  11013495 atgaaatgtcgaccaatttcaatatgtttggttctatcatgttgaactgggttatgagctatgctaatag 11013426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 529
Target Start/End: Complemental strand, 18926 - 18421
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    ||||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||||||  ||||  ||||| |||| | | |||||||||| ||    
T  18926 tgtgaaaactgaatat--tatattttaga--taaataatgtacaaccactaatgtgtttatataaactattataaccaaatgggcctgactaatgacaaa 18831  T
Q  117 cgggccaattacaaattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaatg-atatctatcattcccagactggaa 215  Q
     || |||||| |||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||| |||||||||||||| |   |||||    
T  18830 tggcccaattgcaaattactaataataatagtaaaacttcaatatttacaacactcccccacaagctggtgaatggatatctatcattccgaacttggaa 18731  T
Q  216 acaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatcta 315  Q
    ||||||||||||||| || ||||||  ||||  ||||||||||||| | |||||||||||| ||||||| || |||||||||| |||||||||| |||||    
T  18730 acaattctttcaaagattttgttgtc-agtcttttagttagaagattttcaagattgccttgggaagaggtatatggagtgcaaattagaccaccatcta 18632  T
Q  316 atttttatttgatgaagtgtcggtcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaata 415  Q
    |||||| ||||||||| ||| |||||| |||| ||||||| ||||| |||||   ||||||||| |||| ||||||||||| ||||| ||||||||||||    
T  18631 atttttctttgatgaaatgttggtcaatttcattatgtttggttctatcatg---caatggattatgagttatgctaatagcagattcattatcacaata 18535  T
Q  416 aagtctcattggttcatcactctttatcctcaagtcttccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgct 515  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||| |||||  |||||||| | | |||| ||||||| |||| ||||||||| ||||    
T  18534 aagtatcattggttcattagtctttatcctcaagtcttccaggatgcatttcagacataatagctcatatattccttgtgtcattcccctgaactctgct 18435  T
Q  516 tcaacactagatct 529  Q
    | |  |||||||||    
T  18434 ttagtactagatct 18421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  19 tgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatata 80  Q
    |||||||| |||||  |||||||||||||||||||||||| ||||| |||||||||||||||    
T  18995 tgaaaactaaatat--tatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-111; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 122 - 529
Target Start/End: Complemental strand, 52986576 - 52986170
Alignment:
Q  122 caattacaaattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaat 220  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||| | ||||||||||||| ||   |||||||||    
T  52986576 caattacaaattactaataataattgtaaaacttcactatttacaacactccccctcaagctagtgaattaatatctatcattcctagctaggaaacaat 52986477  T
Q  221 tctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatctaatttt 320  Q
    ||||||||||||   |||||| | | |||||||||||| ||||||||||||||||| |||||||||  |||||||||| |||||||||||||| ||||||    
T  52986476 tctttcaaagttctcgttgttcaataccttagttagaatatctgcaagattgccttgggaagagatctatggagtgcaaattagaccactatcgaatttt 52986377  T
Q  321 tatttgatgaagtgtcggtcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtc 420  Q
    | |||||||||||||  || ||||||||||||||  ||||| |||||||||| |||||  |||||||||||||||  | |||||||||||||||||| |     
T  52986376 tctttgatgaagtgtatgt-aacttcaatatgttg-gttctatcatgttgcattggatcttgagctatgctaatatcatatttattatcacaataaaata 52986279  T
Q  421 tcattggttcatcactctttatcctcaagtcttccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaac 520  Q
    |||||||||| ||||||||||||||| ||||||| || |||||||||| ||||| ||||| |||| ||||||||| |||||||||||||| ||||||| |    
T  52986278 tcattggttcctcactctttatcctcgagtcttctagaatgcttttcagccatagtagttcacatgtcccttgtgtcattgccctgaactttgcttcagc 52986179  T
Q  521 actagatct 529  Q
    |||||||||    
T  52986178 actagatct 52986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 157 - 529
Target Start/End: Complemental strand, 2415180 - 2414805
Alignment:
Q  157 actatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagtta 255  Q
    ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||  ||||||||| | ||||||||||  ||||||| || | ||| ||||    
T  2415180 actatttccaacactccccctcaagctggtgaatgaatatcaatcattcccagcttggaaacaaatttttcaaagttattgttgttcagcctctttgtta 2415081  T
Q  256 gaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatctaatttttatttgatgaagtgtcggtcaacttcaatatgttt 355  Q
    ||||||||||||| ||| ||| |||||||| | |||||||||| ||||||||||| ||||| |||| |||||| ||||||  || |||||||| ||||||    
T  2415080 gaagatctgcaaggttgtcttgggaagagacatatggagtgcaaattagaccactgtctaacttttctttgataaagtgtttgttaacttcaagatgttt 2414981  T
Q  356 tgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatc--actctttatcctcaagtctt 453  Q
     ||||| ||||| |||| |||||| || |||||| |||||| | |||||||||||||||| || ||||||||||||||  | ||||||||||||||||||    
T  2414980 ggttctgtcatgctgcactggattatgggctatgttaatagcatatttattatcacaatagagcctcattggttcatcaaaatctttatcctcaagtctt 2414881  T
Q  454 ccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaacactagatct 529  Q
     || ||||||| | | ||||| || || ||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  2414880 tcaagatgcttctaagccatagtaattcacatatcccctgtgccattgccctgaactctgcttcagcactagatct 2414805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 1286168 - 1286322
Alignment:
Q  16 gtgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgacta 115  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||   |||||||||| | | ||||||||||||    
T  1286168 gtgtgaaaattgaatatattatatttcagagataaataatgtacaaccactaatgtgtttatataggctactctaacctaatgggcctgactaatgacta 1286267  T
Q  116 acgggccaattacaaattactaataataatagtaaaactttactatttacaacac 170  Q
    | ||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  1286268 atgggccaattacaaattactaaaagtaatagtaaaacttcactatttacaacac 1286322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 338 - 527
Target Start/End: Original strand, 27203845 - 27204034
Alignment:
Q  338 gtcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatcactc 437  Q
    |||||||||||||||||| ||||| |   | |||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  27203845 gtcaacttcaatatgtttcgttctatagcgctgcacttgattatgggctatgctaatagtagatttattatcacaataaagtctcattggttcatcacat 27203944  T
Q  438 tttatcctcaagtcttccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaacactagat 527  Q
    ||||| |||||||||||||  ||| | ||||||| || ||||| || |||||||| ||||||||||||| ||| ||||||| ||||||||    
T  27203945 tttattctcaagtcttccaaaatgatcttcaaccgtagtagttcacctatcccttttgccattgccctggactctgcttcagcactagat 27204034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 211 - 452
Target Start/End: Original strand, 52673224 - 52673465
Alignment:
Q  211 tggaaacaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccact 310  Q
    |||||||||| ||||||||||| ||| |||| || |||||||| |||||||||||| | ||||||| ||| |||||| |||| || || ||||| |||||    
T  52673224 tggaaacaatactttcaaagttgatgctgttcagccccttagtcagaagatctgcatggttgccttgggaggagatatatggggtacaaattaggccact 52673323  T
Q  311 atctaatttttatttgatgaagtgtcggtcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatca 410  Q
    ||||||||||| | |||||||||| | |||||||||||||||||| ||||   | ||  ||| |||||| | |||||||||||| ||| |||||||| ||    
T  52673324 atctaatttttctatgatgaagtgcctgtcaacttcaatatgtttggttcagacgtgcagcactggattatcagctatgctaattgtaaatttattaaca 52673423  T
Q  411 caataaagtctcattggttcatcactctttatcctcaagtct 452  Q
    ||||||| ||| | ||||||||| | ||||||| | ||||||    
T  52673424 caataaaatcttactggttcatcccactttatcattaagtct 52673465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 27203531 - 27203679
Alignment:
Q  129 aaattactaataataatagtaaaactttactatttacaacacttcccctcaagctggtgaatg-atatctatcattcccagactggaaacaattctttca 227  Q
    ||||||||| || ||||| ||||| |  | ||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||  |||||    
T  27203531 aaattactactactaataataaaaatacattatttacaacacttctcctcaagctggtgaatgaatatctatcattcccagcttggaaacaatcatttca 27203630  T
Q  228 aagtttatgttgtttagtcccttagttagaagatctgcaagattgcctt 276  Q
    ||| |  || || | || ||||||| ||||||||| ||||| |||||||    
T  27203631 aagctattgctggtcagccccttaggtagaagatcagcaaggttgcctt 27203679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 27203684 - 27203817
Alignment:
Q  211 tggaaacaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccact 310  Q
    |||||||||| ||||||||| |  || || | || ||||||||||||||||| ||||| ||||||| |||||||| | |||||||| | | ||| |||||    
T  27203684 tggaaacaatcctttcaaagctattgctggtcagccccttagttagaagatcagcaaggttgccttgggaagagacatatggagtgtaaactaggccact 27203783  T
Q  311 atctaatttttatttgatgaagtgtcggtcaact 344  Q
     ||||| |||| ||||||| | |||| |||||||    
T  27203784 ctctaacttttctttgatggaatgtctgtcaact 27203817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 2410260 - 2410223
Alignment:
Q  48 taaataatgtataaccactaatgtgtttatataggcta 85  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2410260 taaataatttacaaccactaatgtgtttatataggcta 2410223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 6e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 157 - 529
Target Start/End: Complemental strand, 41898952 - 41898579
Alignment:
Q  157 actatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagtta 255  Q
    ||||||| ||||||  |||||||||||||||||||| |||| ||||||||||   |||||||||   ||||||||||  ||||||| || ||||| ||||    
T  41898952 actatttccaacaccccccctcaagctggtgaatgaatatcaatcattcccaatttggaaacaaacttttcaaagttattgttgttcagcccctttgtta 41898853  T
Q  256 gaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatctaatttttatttgatgaagtgtcggtcaacttcaatatgttt 355  Q
    ||||||||||||| ||||||| |||||||| | |||||||||| ||||||||||| ||||| |||| |||||| ||||||| ||||||||||||||||||    
T  41898852 gaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaacttttctttgataaagtgtctgtcaacttcaatatgttt 41898753  T
Q  356 tgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatcactctttatcctcaagtcttcc 455  Q
     ||||| ||||| |||| |||||| || ||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| |||||||||| |    
T  41898752 ggttctgtcatgctgcactggattatgggctatgctaatagcagatttattatcacaatagagcctcattggttcatcaatctttatactcaagtctttc 41898653  T
Q  456 aggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaacactagatct 529  Q
    | ||||||| ||| ||||| || || ||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  41898652 aagatgcttctcagccatagtaattcacatatcccctgtgccattgccctgaactctgcttcagcactagatct 41898579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 38500283 - 38500130
Alignment:
Q  17 tgtgaaaactgaatatactatattttaga---gataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgac 113  Q
    ||||||||||||||||  ||||||| |||   ||||||||||||| |||||||||||||||||||||||||||  |||||||||| | | ||||||||||    
T  38500283 tgtgaaaactgaatat--tatatttcagacgagataaataatgtacaaccactaatgtgtttatataggctattctaacctaatgggcctgactaatgac 38500186  T
Q  114 taacgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38500185 taataggccaattacaaattactaataataatagtaaaacttcactatttacaaca 38500130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 17508909 - 17508759
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    |||||||| |||||||  ||||||| ||| |||||||||||| |||||||||||||||||||||||||||   ||||||||  | | |||||||||||||    
T  17508909 tgtgaaaattgaatat--tatatttcagaaataaataatgtacaaccactaatgtgtttatataggctattcgaacctaataggcctgactaatgactaa 17508812  T
Q  117 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17508811 tgggccaattacaaattactaataataatagtaaaacttcactatttacaaca 17508759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 25476376 - 25476529
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    ||||||||||||| ||  ||||||| | ||||||||||| || |||||||||||||||| ||| |||| | ||||||||||| | | |||||||| ||||    
T  25476376 tgtgaaaactgaagat--tatatttcaaagataaataatttacaaccactaatgtgtttctatgggctgttttaacctaatgggcctgactaatggctaa 25476473  T
Q  117 cgggccaattacaaattactaataataa---tagtaaaactttactatttacaaca 169  Q
     | || ||||| ||||||||||||||||   ||||||||||| |||||| ||||||    
T  25476474 tgagctaattagaaattactaataataatagtagtaaaacttcactattcacaaca 25476529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 567
Target Start/End: Original strand, 1643074 - 1643112
Alignment:
Q  529 tttgtctatttttgttgatttgtatatgtgattttgatt 567  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  1643074 tttgtgtatttttgttgatttgtatatgtgattttgatt 1643112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 157 - 524
Target Start/End: Original strand, 7812634 - 7813002
Alignment:
Q  157 actatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagtta 255  Q
    ||||||||||| ||| ||| |||||||||||||||| |||| ||| ||||||   ||||||||| | ||||||||||  | ||||| |  ||||| ||||    
T  7812634 actatttacaatactccccgtcaagctggtgaatgaatatcaatctttcccatcatggaaacaaatttttcaaagttattattgttcaacccctttgtta 7812733  T
Q  256 gaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatctaatttttatttgatgaagtgtcggtcaacttcaatatgttt 355  Q
    ||||||||||||| ||||||| ||||||||   |||||||||| ||||||||||| ||||| |||| |||||| || |||| ||||||||||||||||||    
T  7812734 gaagatctgcaaggttgccttgggaagagacgtatggagtgcaaattagaccactgtctaacttttctttgataaaatgtctgtcaacttcaatatgttt 7812833  T
Q  356 tgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatcactctttatcctcaagtcttcc 455  Q
     ||||| ||||| |||| |||||| || |||| |||||||| |||||||||||||||||| || |||||||||| |||| |||||||||| ||||||| |    
T  7812834 ggttctatcatgctgcactggattatgggctaggctaatagcagatttattatcacaatagagcctcattggtttatcaatctttatccttaagtctttc 7812933  T
Q  456 aggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaacacta 524  Q
    | |||| || ||| ||||| || || ||||||||||||||||||||||||||||| ||||||| |||||    
T  7812934 aagatgtttctcagccatagtaattcacatatcccttgtgccattgccctgaactttgcttcagcacta 7813002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 570
Target Start/End: Original strand, 26330991 - 26331026
Alignment:
Q  535 tatttttgttgatttgtatatgtgattttgattgtt 570  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26330991 tatttttgttgatttgtatatatgattttgattgtt 26331026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 12435 - 12589
Alignment:
Q  16 gtgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgacta 115  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||   |||||||||| | | ||||||||||||    
T  12435 gtgtgaaaattgaatatattatatttcagagataaataatgtacaaccactaatgtgtttatataggctactctaacctaatgggcctgactaatgacta 12534  T
Q  116 acgggccaattacaaattactaataataatagtaaaactttactatttacaacac 170  Q
    | ||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  12535 atgggccaattacaaattactaaaagtaatagtaaaacttcactatttacaacac 12589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 90; Significance: 5e-43; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 140 - 446
Target Start/End: Complemental strand, 29523 - 29227
Alignment:
Q  140 aataatagtaaaactttactatttacaacacttcccctcaagctggtgaatga-tatctatcattcccagactggaaacaattctttcaaagtttatgtt 238  Q
    ||||||| ||||| | || |||| |||||||| ||||||||||| |||||||| |||||||||||| |||  || ||||||||||||| || ||  ||||    
T  29523 aataataataaaaatatattattcacaacactccccctcaagcttgtgaatgagtatctatcattcacagcttgaaaacaattctttccaatttattgtt 29424  T
Q  239 gtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcagattagaccactatctaatttttatttgatgaagtgtcgg 338  Q
    ||| |  || |||||| ||||||||||||| ||||||| |||||||| | ||  |||||| |||| ||||||||||||            |||||| | |    
T  29423 gttcaacccattagttggaagatctgcaaggttgccttgggaagagacatatacagtgcaaattaaaccactatctaac-----------gaagtgcctg 29335  T
Q  339 tcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatcactct 438  Q
    ||||||||||||||||| ||| | ||||| |||| |||||| |||| ||||||||| | ||||||||||||||||||  |||||||||||||||| ||||    
T  29334 tcaacttcaatatgtttagttatatcatgctgcactggattatgagttatgctaatggcagatttattatcacaatagtgtctcattggttcatcgctct 29235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 49846 - 49667
Alignment:
Q  339 tcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatcactct 438  Q
    |||||||||| |||||| | | | |||||||||  |||||| |||| || |||||||| ||||||||||||| |||| ||||||||| ||||||||||||    
T  49846 tcaacttcaacatgtttagctatatcatgttgccctggattatgagttacgctaatagcagatttattatcataatagagtctcatttgttcatcactct 49747  T
Q  439 ttatcctcaagtcttccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttcaa 519  Q
    |||||||| ||||||||| |||||||||    |||||||||||||||||||| |||| ||||||| |||||||| ||||||    
T  49746 ttatcctcgagtcttccaagatgctttt-tgtcataatagtttacatatcccctgtgacattgccttgaactatacttcaa 49667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 44420700 - 44420550
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    ||||||||||||||||  ||||||| |||||||||| || || |||||||||||||||||||||||||||  |||||| ||| | | ||| |||||||||    
T  44420700 tgtgaaaactgaatat--tatatttcagagataaatgatatacaaccactaatgtgtttatataggctattctaaccttatgggcctgaccaatgactaa 44420603  T
Q  117 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
     |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  44420602 tgggccaattacaaattactaataataatagtaaaacttcactatttataaca 44420550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 16985658 - 16985812
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaat--gtgtttatataggctatcttaacctaatgagtcc-gactaatgac 113  Q
    ||||||||||||||||  ||||||| |||||||||||||||| ||||||||||  ||||||||| |||||||  |||||||||| |||| ||||||||||    
T  16985658 tgtgaaaactgaatat--tatatttcagagataaataatgtacaaccactaatatgtgtttataaaggctattctaacctaatg-gtcctgactaatgac 16985754  T
Q  114 taacgggccaattacaaattactaataataatagtaaaactttactatttacaacact 171  Q
    ||| ||||||||||||||||| |||||||||||||||||| | | |||||||| ||||    
T  16985755 taatgggccaattacaaattattaataataatagtaaaacatcattatttacagcact 16985812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 10712038 - 10711880
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaa-taatgtataaccactaatgtgtttatataggctat---ct----taacctaatgagtccgacta 108  Q
    ||||||||||||||||  ||||| | ||||||||| ||||||||| |||||||||| ||||||||||||||   ||    |||||||||| | |  ||||    
T  10712038 tgtgaaaactgaatat--tatatgtcagagataaaataatgtatatccactaatgtatttatataggctataggctattctaacctaatgggcctaacta 10711941  T
Q  109 atgactaacgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
    |||||||| |||| ||||||||||||||||||||||| |||||| || |||||||||||||    
T  10711940 atgactaatgggctaattacaaattactaataataattgtaaaaattcactatttacaaca 10711880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 1425052 - 1424921
Alignment:
Q  139 taataatagtaaaactttactatttacaacacttcccctcaagctggtgaatgatatctatcattcccagactggaaacaattctttcaaagtttatgtt 238  Q
    |||||||| ||||| || ||||||||||||||| | |||||||||||| || ||||||||| ||| ||||  || ||  |||||| |  || ||  ||||    
T  1425052 taataatattaaaatttcactatttacaacactccacctcaagctggt-aaagatatctattattaccagcttgaaaggaattctctttaaattcttgtt 1424954  T
Q  239 gtttagtcccttagttagaagatctgcaagatt 271  Q
    ||| |||| |||||||||||||||||| |||||    
T  1424953 gttcagtctcttagttagaagatctgctagatt 1424921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 32749531 - 32749483
Alignment:
Q  121 ccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||    
T  32749531 ccaattacaaattactaataataatagtaaaatttcattatttacaaca 32749483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 30996930 - 30996884
Alignment:
Q  159 tatttacaacacttcccctcaagctggtgaat-gatatctatcattc 204  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30996930 tatttacaacacttcctctcaagctggtgaatggatatctatcattc 30996884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 11393210 - 11393060
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    |||||||||| |||||  ||||||| |||||||||||||||| ||||||| |||||||||||||||||||  ||| |||||| | | |||||||||||||    
T  11393210 tgtgaaaacttaatat--tatatttcagagataaataatgtacaaccactgatgtgtttatataggctattctaagctaatgggcctgactaatgactaa 11393113  T
Q  117 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
     | | ||||||||||||||||||||||||  |||||||| | |||||||||||    
T  11393112 tgagacaattacaaattactaataataatcataaaacttcattatttacaaca 11393060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 11402937 - 11402787
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaa 116  Q
    |||||||||| |||||  ||||||| |||||||||||||||| ||||||| |||||||||||||||||||  ||| |||||| | | |||||||||||||    
T  11402937 tgtgaaaacttaatat--tatatttcagagataaataatgtacaaccactgatgtgtttatataggctattctaagctaatgggcctgactaatgactaa 11402840  T
Q  117 cgggccaattacaaattactaataataatagtaaaactttactatttacaaca 169  Q
     | | ||||||||||||||||||||||||  |||||||| | |||||||||||    
T  11402839 tgagacaattacaaattactaataataatcataaaacttcattatttacaaca 11402787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 566
Target Start/End: Original strand, 5982210 - 5982247
Alignment:
Q  529 tttgtctatttttgttgatttgtatatgtgattttgat 566  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5982210 tttgtgtatttttgttgatttgtatatgtgattttgat 5982247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 40361087 - 40361167
Alignment:
Q  16 gtgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatg 98  Q
    |||||||||||||||||  |||| || ||||||| |  ||||| || |||||||||| |||||||||||||  ||||||||||    
T  40361087 gtgtgaaaactgaatat--tatacttcagagatataatatgtacaatcactaatgtgcttatataggctattctaacctaatg 40361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 384 - 524
Target Start/End: Complemental strand, 3008832 - 3008692
Alignment:
Q  384 gctatgctaatagtagatttattatcacaataaagtctcattggttcatcactctttatcctcaagtcttccaggatgcttttcaaccataatagtttac 483  Q
    ||||||||||||  |||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||| ||| ||| ||| |||||  | || ||    
T  3008832 gctatgctaataaaagatttatcatcacaatagagcctcattggttcatcaatctttatcctcaagtcttccaagatacttctcagccatagaaattcac 3008733  T
Q  484 atatcccttgtgccattgccctgaactatgcttcaacacta 524  Q
    ||| ||| | |||||||| |||||||| ||||||| |||||    
T  3008732 ataccccctatgccattgtcctgaactctgcttcagcacta 3008692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 29443615 - 29443697
Alignment:
Q  17 tgtgaaaactgaatatactatattttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagt 101  Q
    ||||||||||||||||  ||||||| |  |||||||||| || |||||||||||||||||||||| ||||  |||||||||||||    
T  29443615 tgtgaaaactgaatat--tatatttcactgataaataatatacaaccactaatgtgtttatatagactattctaacctaatgagt 29443697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 39895527 - 39895409
Alignment:
Q  192 atatctatcattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatg 291  Q
    ||||||||| ||||||   |||||||||||||||||||| |  ||||||| || ||||| ||||| | ||||||||| |||||||| ||||| || |  |    
T  39895527 atatctatcgttcccaacttggaaacaattctttcaaagctattgttgttcagccccttggttagtaaatctgcaaggttgccttaagaagacatgc--g 39895430  T
Q  292 gagtgcagattagaccactat 312  Q
    ||||||| |||||||||||||    
T  39895429 gagtgcaaattagaccactat 39895409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 39364466 - 39364531
Alignment:
Q  109 atgactaacgggccaattacaaattactaataataatagtaaaactttactatttacaacacttcc 174  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| | | ||||||||| ||||    
T  39364466 atgactaatggaccaattagaaattactaataataatagtaaaacttcattgtttacaacatttcc 39364531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 14521 - 14385
Alignment:
Q  38 attttagagataaataatgtataaccactaatgtgtttatataggctatcttaacctaatgagtccgactaatgactaacgggccaattacaaattacta 137  Q
    |||| ||| |||||||||||| |||||||||| | ||||| ||| ||||  || ||||||| |||  |||||||||||| ||||  ||||||||||||||    
T  14521 atttcagaaataaataatgtacaaccactaatatttttatgtagactattctagcctaatg-gtctaactaatgactaaagggcttattacaaattacta 14423  T
Q  138 ataat---aatagtaaaactttactatttacaacactt 172  Q
    |||||   ||||||||||||| ||||||| ||||||||    
T  14422 ataataataatagtaaaacttcactatttccaacactt 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 339 - 518
Target Start/End: Original strand, 4464051 - 4464229
Alignment:
Q  339 tcaacttcaatatgttttgttctttcatgttgcaatggattgtgagctatgctaatagtagatttattatcacaataaagtctcattggttcatcactct 438  Q
    ||||||||||||||||| ||| | ||||| || | ||||||  | ||||  |||||||  | ||||||||||||||||||||||||||||||||  | |     
T  4464051 tcaacttcaatatgtttggttttatcatgctgtactggattacgggctacactaatagcgggtttattatcacaataaagtctcattggttcatttcacc 4464150  T
Q  439 ttatcctcaagtcttccaggatgcttttcaaccataatagtttacatatcccttgtgccattgccctgaactatgcttca 518  Q
     ||||  ||||| ||||  |||| | |||| ||||| | ||| |||||||||||||| |||||||||||||| |||||||    
T  4464151 gtatctacaagttttcctagatgatcttcagccatagtcgttcacatatcccttgtg-cattgccctgaactctgcttca 4464229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 4463923 - 4464038
Alignment:
Q  200 cattcccagactggaaacaattctttcaaagtttatgttgtttagtcccttagttagaagatctgcaagattgccttaggaagagatacatggagtgcag 299  Q
    |||||||||| |||||||||| |||| ||||||  |  | || || ||||||||||||||| ||| ||| || |||| ||| |||||| |||||||||||    
T  4463923 cattcccaga-tggaaacaatccttttaaagttgttcctattcagccccttagttagaagacctgtaaggttaccttgggaggagatatatggagtgcag 4464021  T
Q  300 attagaccactatctaa 316  Q
     |||| |||||||||||    
T  4464022 cttaggccactatctaa 4464038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 2737990 - 2738027
Alignment:
Q  48 taaataatgtataaccactaatgtgtttatataggcta 85  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2737990 taaataatttacaaccactaatgtgtttatataggcta 2738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University