View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739-Insertion-12 (Length: 862)
Name: NF1739-Insertion-12
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 275 - 768
Target Start/End: Complemental strand, 17323610 - 17323115
Alignment:
| Q |
275 |
aattgaaatacatgaaattcaaaatatcaatccattcactcatcttaaaattaaaatttatacccatttaaattatctggtgatgcttactaaaaacctt |
374 |
Q |
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| T |
17323610 |
aattaaaatacatgaaattcgaaatatcaaaccagtcactcatcttaaagttaaaatttatacccatttaaattatctgatgatgcttactagaaacctt |
17323511 |
T |
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| Q |
375 |
gaaatatactctgtaagttttagattcaattcacctatactagtttaacttcattaaaagaaaaa--caagaagtgcaaatctaattctaaaattttaag |
472 |
Q |
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| T |
17323510 |
aaaatatattccgtaagttttagattcaattctccgatactagtttaacttcataaaaaaaaaaaaacaagaagtgcaaatctaattctaaaattttaac |
17323411 |
T |
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| Q |
473 |
taattctttccatattcattggcactatttattatttttaaaaaggtcgttttccaattaagagtgctttttggttggattttaagaagtgaatgtggat |
572 |
Q |
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| T |
17323410 |
taattctttccatattcattggcactatttattatttttataaaggtcgttttccaattaagagtgctttttggttggagatttagaagtgaatgtggat |
17323311 |
T |
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| Q |
573 |
gtttgacaacgtgtgaaaagataagtgtgtctatgtggagtctaattgcgatgtgtggatagttgaaagccttttacttttctaacttattggataatcn |
672 |
Q |
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| T |
17323310 |
gtttgacaacgtgtgaaaagataagtgtgtctatgtggatactaattgcgatgtgtggatagttgaaagccttttacttttctaacttattggataatct |
17323211 |
T |
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| Q |
673 |
nnnnnngtccaccctaattttcttcccttctagaaccaaaggacggcacgacaatcactacaattaattattattgtcatcatttgtttaatgttt |
768 |
Q |
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| T |
17323210 |
ttttttgtccaccctaattttcttcccttctagaaccaaaggacggcacggcaataactacgattaattattattgtcatcatttgtttaatgttt |
17323115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 17323993 - 17323751
Alignment:
| Q |
6 |
caagaaagcgaagaaaatgaggtggcatattatgattgggcaaaacaatttgattaacacgcatctcatgtattgttatcaatcccatattttatagcac |
105 |
Q |
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| T |
17323993 |
caagaaagcaaagaaaatgaggtggcatattataattgggcaaaataatttgattaacacgcatctcatgtattgttatcaatcccatattttatagcac |
17323894 |
T |
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| Q |
106 |
gtgctaaatacgcacattcttgctagtttctttcgtaaagaataatatcactctttaatcattttttgtattattttctcatgggtcctttcacggtaag |
205 |
Q |
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| T |
17323893 |
gtgctaaatacgcacattcttgctagtttctttcgtaaagaataacatcactctttaatgattttttgtattattttctcatggttcctttcacggtaag |
17323794 |
T |
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| Q |
206 |
aggatcttagctcatctccaaaacatcaacttaaaatattaca |
248 |
Q |
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| T |
17323793 |
aggatcttaactcatctccaaaacatcaacttaaaatattaca |
17323751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 786 - 862
Target Start/End: Complemental strand, 17323129 - 17323053
Alignment:
| Q |
786 |
atttgtttaatgtatatggatatttagatttaattgtaaaagtaaaaaagcttggatataagttgtagtataattta |
862 |
Q |
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| T |
17323129 |
atttgtttaatgtttatggatatttagatttaattgtaaaagtaaaaaagcttggatataagttgtagtataattta |
17323053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 32131426 - 32131548
Alignment:
| Q |
6 |
caagaaagcgaagaaaatgaggtggcatattatgattgggcaaaacaatttgattaacacgcatctcatgtattgttatcaatcccatattttatagcac |
105 |
Q |
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| T |
32131426 |
caagaaagctaagaaaatgaggtggcatattgtgattgggtaaaactatttgatacacatgca-cccatgtattgtcatcaatccccgattgtacaacac |
32131524 |
T |
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| Q |
106 |
gtgctaaatacgcacattcttgct |
129 |
Q |
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| T |
32131525 |
gtgctcaatacatacattcttgct |
32131548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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