View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739-Insertion-14 (Length: 638)

Name: NF1739-Insertion-14
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739-Insertion-14
NF1739-Insertion-14
[»] chr8 (1 HSPs)
chr8 (12-638)||(12833567-12834194)


Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 12 - 638
Target Start/End: Original strand, 12833567 - 12834194
Alignment:
Q  12 gagtttctgtgatcaaatctagcaagtgagtagagagagcatatgctcyaaggtttagaaaatcttgtacctctgcctttgattgatctagaatagaaag 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833567 gagtttctgtgatcaaatctatcaagtgagtagagagagcatatgctctaaggtttagaaaatcttgtacctctgcctttgattgatctagaatagaaag 12833666  T
Q  112 ctacatcagcgaggacgtaagagttcaattgctcataaccttgataatccgtgtgttccttctgatttccttattcctgttgctcaatttcaattctgct 211  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  12833667 ctacatcagctaggacataagagttcaattgctcataaccttgataatccgtgtgttccttctgatttccttattcctgctgctcaatttcaactctgct 12833766  T
Q  212 gcaatcagtcatcaggaatgtttttaatttcataacaaaatggtacttggatagttcatctattaatccatgataatctagtcagtcaatgacaaggttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833767 gcaatcagtcatcaggaatgtttttaatttcataacaaaatggtacttggatagttcatctattaatccatgataatctagtcagtcaatgacaaggttt 12833866  T
Q  312 taagtcacaattaagttttgatctttaataatgcggataactgctgttagatacagctgccacttaaattacaacgatgttatagttat--agacataaa 409  Q
    ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  12833867 taaatcacaattaagttgtgatctttaataatgcagataactgctgttagatacagctgccacttaaattacaacgatgttatagttatagagacataaa 12833966  T
Q  410 aaacctttgtattatacgttacggtccatattgagttaacttctgaagcttgtaatcccatgttttccatcgtctgtggtggcttcctaaggcctccacc 509  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12833967 aatcctttgtattatacgttacggtccatattgagttaacttctgaagcttgtaataccatgttttccatcgtctgtggtggcttcctaaggcctccacc 12834066  T
Q  510 atctctaatttccaaccttttctctttaatatcagattattaatgtctagtgttatcacttatttatcttgccatttttctttctaattgcaggtatata 609  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12834067 atctct-agttccaaccttttctctttaatatcagattattaatgtctagtgttatcacttatttatcttgccatttttctttctaattgcaggtatata 12834165  T
Q  610 aatctgactcaagatctgcagcgagttaa 638  Q
    |||||||||||||||||||||||||||||    
T  12834166 aatctgactcaagatctgcagcgagttaa 12834194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University