View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739-Insertion-15 (Length: 900)
Name: NF1739-Insertion-15
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-15 |
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Alignment Details
Target: chr5 (Bit Score: 798; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 7 - 895
Target Start/End: Complemental strand, 3084791 - 3083902
Alignment:
| Q |
7 |
atgtccggctgtatgaatacgttgatttcttaattgcaggggagtcggtcccaaaaatagtgtaatattgttatttgttagctaggccatattgatgttt |
106 |
Q |
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| T |
3084791 |
atgtccggctgtatgaatacgttgatttcttaattgcaggagagtcggtcccaaaaatagtgtaatattgttatttgttagctaggccatattgatgttt |
3084692 |
T |
|
| Q |
107 |
atttggtttgggttttaacttttacataataaattgagttgggtgtgacttagcaagtgtaattgcatgttgttttgaaagctttgcagtaaatgtagta |
206 |
Q |
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| T |
3084691 |
atttggtttggattttaacttttacataataaattgagttgggtgtaacttagcaagtgcaattgcatgttgttttgaaagctttgcagtaaatgtagta |
3084592 |
T |
|
| Q |
207 |
tgtcttcctaaaagaaaatgtaccatgtcttgaaaaagtattcataagtcgaaaacatatcgcactagtttgtaagaattgatttagatcgaacacaaat |
306 |
Q |
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| T |
3084591 |
tgtcttcctaaaagaaaatgtaccatgtcttgaaaaagtattaataagtcgaagacatatcgcactagtttgtaagaattgatttagatggaacacaaat |
3084492 |
T |
|
| Q |
307 |
tgttaaatgtaccttgggagtaaacattttggactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatg |
406 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084491 |
tgttaaatgtaccttgggagtaaacattgtgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatg |
3084392 |
T |
|
| Q |
407 |
ccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcattggattatctgacattccttgtcctaccaaaggttgat |
506 |
Q |
| |
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| T |
3084391 |
ccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcattggattatctgacattccttgtcctaccaaaggttgat |
3084292 |
T |
|
| Q |
507 |
ctaacactgcactgatgttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactat |
606 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084291 |
ctaacactacactgatgttgtgttccctaaggtgatgtcctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactat |
3084192 |
T |
|
| Q |
607 |
gatcttattcttagtcccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactccatgtgcaacaggccttgaatttgatctt |
706 |
Q |
| |
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||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3084191 |
gatctcattcttagtcccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactccatgtgcaacaggccttgaatttgatctt |
3084092 |
T |
|
| Q |
707 |
tctgtttaatatcatacaccatgcattctcaaaataattattacatggaccaagtcaccaaaataaataggaaaagagtgaggaaattaacattttagta |
806 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3084091 |
tctgtttaatatcatacaccatgcattcacaaaataattattacatggaccaagtcaccaaaataaatgggaaaagagtgaggaaattaacattttagta |
3083992 |
T |
|
| Q |
807 |
ctcatatttagtcattcaaattcgagaaattgctatttagtctctt-aaatgaaccgttagtcaatttaatctttgttaaaatttagcaa |
895 |
Q |
| |
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| T |
3083991 |
ctcatatttagtcattcgaattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaa |
3083902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 224 - 775
Target Start/End: Complemental strand, 3093455 - 3092903
Alignment:
| Q |
224 |
atgtaccatgtcttgaaaaagtat-tcataagtcgaaaacatatcgcactagtttgtaagaattgatttagatcgaacacaaattgttaaatgtaccttg |
322 |
Q |
| |
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||||| |||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
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|
| T |
3093455 |
atgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcgcactagtttgtaagaattgatttagatcgaacacaaattttaaaatgtacctcg |
3093356 |
T |
|
| Q |
323 |
ggagtaaacattttggactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatga |
422 |
Q |
| |
|
|||| ||||||| | | || ||| | || |||||| | ||| ||||| |||||||||| |||||||| ||| |||||||||||||||| ||||||| |
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|
| T |
3093355 |
ggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatga |
3093256 |
T |
|
| Q |
423 |
gggagacctctacgggggaaggagacgggacataaacagcgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactgcactgat |
522 |
Q |
| |
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|||| |||||||| || |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||| ||||||| ||||||| |
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|
| T |
3093255 |
gggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctacaaatggttgatgtaacactacactgat |
3093156 |
T |
|
| Q |
523 |
gttgtgttccctaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatcttattcttagtc |
622 |
Q |
| |
|
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3093155 |
gttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtc |
3093056 |
T |
|
| Q |
623 |
ccatgactcaagtatgctctgtgttctgtccctcgcgcatccttgaatagaactccatgtgcaacaggccttgaatttgatctttctgtttaatatcata |
722 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||| || ||| |||||| ||||||| |
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| T |
3093055 |
ccatgattcaagtatgccctgtgttctgtccctcgtgcatccttgtatagaactccatgtgcaattggctttgaacttaatccacctgtttgatatcatg |
3092956 |
T |
|
| Q |
723 |
caccatgcattctcaaaataattattacatggaccaagtcaccaaaataaata |
775 |
Q |
| |
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||| ||| |||| || ||| || |||| ||||||| || || ||||||||||| |
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| T |
3092955 |
cacaatgtattcacataatcatcattaaatggaccgagacaacaaaataaata |
3092903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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