View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739-Insertion-2 (Length: 531)
Name: NF1739-Insertion-2
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 237 - 494
Target Start/End: Complemental strand, 23144696 - 23144440
Alignment:
| Q |
237 |
tagtcaaattcattgaactaattgaaccatgagttaaagatgtcactagcttagttctccttgtgaataatatgctttgcaagattaaatttcttgtcga |
336 |
Q |
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| T |
23144696 |
tagtaaaattcactgaactaatcgaaccatgagtcgaagatgccactagtctaat-ctccttattaataatatgctttgcaagattaaacttcttgtcga |
23144598 |
T |
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| Q |
337 |
ttacactttcaggggattgtaaagatcagaaaactggaattaaagggcgatgtgttgtgggggcgattaaaaattacaccaaccagctcatcgattacgg |
436 |
Q |
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| T |
23144597 |
tttaactttcaggggattgtaaagatcagaaaactggaattaaggggcgatgtgttgtgggggctattacaaattacaccaaccagctcctcgattatgg |
23144498 |
T |
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| Q |
437 |
caatgccataaaacctaaatgtaaatgctcctttccaaattaataaactaagttgtac |
494 |
Q |
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| T |
23144497 |
cagtgccataaaacctaaatgtaaatgctcctttccaaattaataaactaatttgtac |
23144440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 23144956 - 23144875
Alignment:
| Q |
8 |
ctgagggattaatggatttcaaacattcttagccgattccacaacatctaactccagttcactcaacactagatacacttcc |
89 |
Q |
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| T |
23144956 |
ctgagggattaatggatttcaaacattcttagccgattccacaacatctaactccagttcactcaacactagatacacttcc |
23144875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 23144848 - 23144774
Alignment:
| Q |
83 |
cacttccaacgatcaacgcctccttaactagattaaatcaaggtttaatgagttcaaccatagttcattcaacag |
157 |
Q |
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| T |
23144848 |
cacttccaacgatcaacgcctccttaactagattaaatcaaggtttaatgagttcaaccatagttcattcaacag |
23144774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 23135471 - 23135419
Alignment:
| Q |
344 |
ttcaggggattgtaaagatcagaaaactggaattaaagggcgatgtgttgtgg |
396 |
Q |
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| T |
23135471 |
ttcaggggattgtatagatcataaaactggaacaaaggggcgatgtgtcgtgg |
23135419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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