View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739-Insertion-4 (Length: 289)

Name: NF1739-Insertion-4
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739-Insertion-4
NF1739-Insertion-4
[»] chr8 (1 HSPs)
chr8 (7-289)||(25840228-25840511)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 25840511 - 25840228
Alignment:
Q  7 agataattataattaaagttaaatattttttatcaacattggatatatttggaatcacaatgcaacttgacaaagtatatcactgtataacacttgaaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840511 agataattataattaaagttaaatattttttatcaacattggatatatttggaatcacaatgcaacttgacaaagtatatcactgtataacacttgaaat 25840412  T
Q  107 tctaaaatgtagattgtccaaaaccacagaccctaattttgctaaactcactaggaatttgatacgtaaaatttggggtttggcattgacttgaagagtg 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840411 tctaaaatgtagattgtccaaaaccacggaccctaattttgctaaactcactaggaatttgatacgtaaaatttggggtttggcattgacttgaagagtg 25840312  T
Q  207 caa-atttgtttctgtatcaatcggtgctttcattgagagaacctcctatgacatacccgtatcactcatcctacattactcca 289  Q
    |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840311 caatttttttttctgtatcaatcggtgctttcattgagagaacctcctatgacatacccgtatcactcatcctacattactcca 25840228  T

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