View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739-Insertion-5 (Length: 166)

Name: NF1739-Insertion-5
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739-Insertion-5
NF1739-Insertion-5
[»] chr5 (1 HSPs)
chr5 (8-166)||(5990665-5990823)
[»] chr1 (2 HSPs)
chr1 (15-49)||(52444529-52444563)
chr1 (9-49)||(29068072-29068112)
[»] chr2 (1 HSPs)
chr2 (14-46)||(7709745-7709777)
[»] chr7 (2 HSPs)
chr7 (21-48)||(41873595-41873622)
chr7 (9-48)||(43930106-43930145)
[»] chr3 (3 HSPs)
chr3 (9-48)||(29235642-29235681)
chr3 (9-48)||(42780665-42780704)
chr3 (9-48)||(54187076-54187115)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 5990665 - 5990823
Alignment:
Q  8 ggagacagtgttggaaagagagtgtccatagcactcctctttttcatatattcagtctaaagacatgctacctctaaactttcttaattgtttggccttc 107  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5990665 ggagaaagtgttagaaagagagtgtccatagcactcctctttttcatatattcagtctaaagacaggctacctctaaactttcttaattgtttggccttc 5990764  T
Q  108 agtttttcttgatccaaggcatggccaccggctaatgatgaattcatagtttgtcaata 166  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5990765 agtttttcttgatccaaggcatggcaaccggctaatgatgaattcatagtttgtcaata 5990823  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 52444529 - 52444563
Alignment:
Q  15 gtgttggaaagagagtgtccatagcactcctcttt 49  Q
    ||||| |||||||||||||||||||||||||||||    
T  52444529 gtgttagaaagagagtgtccatagcactcctcttt 52444563  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 29068112 - 29068072
Alignment:
Q  9 gagacagtgttggaaagagagtgtccatagcactcctcttt 49  Q
    |||| |||||| ||||||||||||||||| |||||||||||    
T  29068112 gagaaagtgttagaaagagagtgtccataacactcctcttt 29068072  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 7709777 - 7709745
Alignment:
Q  14 agtgttggaaagagagtgtccatagcactcctc 46  Q
    |||||| ||||||||||||||||||||||||||    
T  7709777 agtgttagaaagagagtgtccatagcactcctc 7709745  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 48
Target Start/End: Original strand, 41873595 - 41873622
Alignment:
Q  21 gaaagagagtgtccatagcactcctctt 48  Q
    ||||||||||||||||||||||||||||    
T  41873595 gaaagagagtgtccatagcactcctctt 41873622  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 43930106 - 43930145
Alignment:
Q  9 gagacagtgttggaaagagagtgtccatagcactcctctt 48  Q
    |||| |||||| ||||||||||||||||| ||||||||||    
T  43930106 gagagagtgttagaaagagagtgtccataacactcctctt 43930145  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 29235681 - 29235642
Alignment:
Q  9 gagacagtgttggaaagagagtgtccatagcactcctctt 48  Q
    |||| |||||| ||||||||||||||||| ||||||||||    
T  29235681 gagagagtgttagaaagagagtgtccataacactcctctt 29235642  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 42780704 - 42780665
Alignment:
Q  9 gagacagtgttggaaagagagtgtccatagcactcctctt 48  Q
    |||| |||||| |||||| |||||||||||||||||||||    
T  42780704 gagagagtgttagaaagatagtgtccatagcactcctctt 42780665  T

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Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 54187076 - 54187115
Alignment:
Q  9 gagacagtgttggaaagagagtgtccatagcactcctctt 48  Q
    |||| |||||| |||||||||||||||||||||| |||||    
T  54187076 gagagagtgttagaaagagagtgtccatagcacttctctt 54187115  T

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