View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739-Insertion-6 (Length: 286)
Name: NF1739-Insertion-6
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-6 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 8868491 - 8868769
Alignment:
| Q |
8 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaa |
107 |
Q |
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| T |
8868491 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgtgaatatttcttcatgtctcaattggagctctaaatcccaa |
8868590 |
T |
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| Q |
108 |
gggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttgagaaact |
207 |
Q |
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| T |
8868591 |
gggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttggttactccaacgtcttggttgagaaact |
8868690 |
T |
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| Q |
208 |
tgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttagaatatggatttgagatttcatggttgcgtca |
286 |
Q |
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| T |
8868691 |
tgcaaggaaatgaagtggtttcttatgatgttattcgcaaggcgttagaatatggatttgagatttcgtggttgcgtca |
8868769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 8864243 - 8864433
Alignment:
| Q |
8 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaa |
107 |
Q |
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| T |
8864243 |
ttttgagcatatagtttacttgaattgcagccatcaagtgactaacagtcctaaatatgtgaatacttcttcatgtctgaatttgaactccaaatccaaa |
8864342 |
T |
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| Q |
108 |
gggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggt |
198 |
Q |
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| T |
8864343 |
gggtattatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacttcttggt |
8864433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 9099940 - 9100210
Alignment:
| Q |
8 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaa |
107 |
Q |
| |
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| T |
9099940 |
ttttgagcatatagtttacatgaattgtactcatcaagtgattaacaatcataaatatgtgaatgcttcatcttgccttaattcgaactccaaatccaaa |
9100039 |
T |
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| Q |
108 |
gggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttgagaaact |
207 |
Q |
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| T |
9100040 |
gggtattatatttatgctattgctggtaaattagttgctcaagattttcaagttggttgtcatgcgaagttagtggctcccacttcatggttgggaaatt |
9100139 |
T |
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| Q |
208 |
tgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttagaatatggatttgagatttcatgg |
278 |
Q |
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| T |
9100140 |
tgcaaagaaatcaagtactttcatatgatatcattcataaggcgttagtatatggatttgagatttcatgg |
9100210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 8972121 - 8971932
Alignment:
| Q |
8 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctc-aattggagctctaaatccaa |
106 |
Q |
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|||| ||||||||||||||||||||||||| |||| ||| || ||||||||||||||||| |||||||||| ||| || |||| | | | ||||| |
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| T |
8972121 |
ttttaagcatatagtttacttgaattgtacccatcaagtaactaacaatcctaaatatgtgaatacttcttcctgtttccaatttgg----ttactccaa |
8972026 |
T |
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| Q |
107 |
agggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttg |
200 |
Q |
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| T |
8972025 |
aagtaattatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacatctttgttg |
8971932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 9007149 - 9006960
Alignment:
| Q |
8 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctc-aattggagctctaaatccaa |
106 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||| ||| || ||||||||||||||||| |||||||||| ||| || |||| | | | ||||| |
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| T |
9007149 |
ttttaagcatatagtttacttgaattgtacccatcaagtaactaacaatcctaaatatgtgaatacttcttcctgtttccaatttgg----ttactccaa |
9007054 |
T |
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| Q |
107 |
agggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttg |
200 |
Q |
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| T |
9007053 |
aagtaattatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacatctttgttg |
9006960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 9136720 - 9136895
Alignment:
| Q |
102 |
tccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttga |
201 |
Q |
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| T |
9136720 |
tccaaagggtattctatttatgctatggctggtgatttagttgctcaagattttcaagttggctgtcatgtgaaatcagttactctaacttcttggtcgg |
9136819 |
T |
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| Q |
202 |
gaaacttgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttagaatatggatttgagatttcatggtt |
280 |
Q |
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| T |
9136820 |
g---tttgcaaagaaatcaattacttacatatgatgtcattcataaggcgttagtgtatggatttgaggtttcatggtt |
9136895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 285
Target Start/End: Original strand, 9072447 - 9072678
Alignment:
| Q |
51 |
aacaatcctaaatatgttgatacttcttcatgtctcaatt-ggagctctaaatccaaagggtattatatttatgctatggctggtgatttaattgctgat |
149 |
Q |
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| T |
9072447 |
aacaatcctaaatatgtgaatacttcttcctgtctcactcaggag-tccaaatcaaaaggctattatatttatgctatagctggtcatataactgctgaa |
9072545 |
T |
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| Q |
150 |
gattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttgagaaacttgcaaggaaatgaagtcgtttcttatgatgttattcgcaagg |
249 |
Q |
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| T |
9072546 |
gatttacaagttggttgtcatgtgaaatttattactcccacttct---ttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaatacaaaagg |
9072642 |
T |
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| Q |
250 |
cgttagaatatggatttgagatttcatggttgcgtc |
285 |
Q |
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| T |
9072643 |
cattagtgtatggatttgagatttcatggttgcgtc |
9072678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 9093566 - 9093723
Alignment:
| Q |
8 |
ttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaa |
107 |
Q |
| |
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|||| |||||||||| ||| | ||||||| ||||| |||||||||||| |||||||||| |||||||||| |||||||| ||| |||||||| |
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| T |
9093566 |
ttttcagcatatagtatacataaattgtagccatcgtgtgaccaacaattctaaatatgtcaatacttcttcctgtctcaa------ctcgcaatccaaa |
9093659 |
T |
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| Q |
108 |
gggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtga |
174 |
Q |
| |
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| T |
9093660 |
ggctact---tttatgctatggctggtgatttaattgtcgaagactttcaagttggttgtcatgtga |
9093723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 9065387 - 9065209
Alignment:
| Q |
9 |
tttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaag |
108 |
Q |
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|||||||||||||||||| ||| |||||| ||| ||| || | |||| | || ||||| |||||| | ||||||||| | ||| |||||||||| |
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| T |
9065387 |
tttgagcatatagtttacctgagttgtaccaatcaagtcactagcaattccaactatgtgattacttcaccttgtctcaatcgacactccaaatccaaag |
9065288 |
T |
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| Q |
109 |
ggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactcc |
187 |
Q |
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| T |
9065287 |
gcaattatatttatgctatagttggtgatttaacggctgaggactttcaagttggttgtcatgtgaaattggttactcc |
9065209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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