View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739-Insertion-9 (Length: 877)
Name: NF1739-Insertion-9
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739-Insertion-9 |
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| [»] scaffold0085 (3 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 287; Significance: 1e-160; HSPs: 3)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 570 - 877
Target Start/End: Complemental strand, 45949 - 45642
Alignment:
| Q |
570 |
tatatcattgattattatgatttgttaattacatttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagt |
669 |
Q |
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| T |
45949 |
tatatcattgattattatgatttgttaattacatttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagt |
45850 |
T |
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| Q |
670 |
gtctaacatcaacacaacactgacaggtataattacattttattatgctannnnnnnaaattattatcggtctcgatgtgtcactatgtgtcactgttgt |
769 |
Q |
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| T |
45849 |
gtctaacatcaacacaacactgacaggtataattacattttattatgctatttttttaaattattatcggtctcgatgtgtcactatgtgtcactgttgt |
45750 |
T |
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| Q |
770 |
gtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaaccaaccatttgatcggttaaattgattaattag |
869 |
Q |
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| T |
45749 |
gtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaaccaaccatttgatcggttaaattgattaattag |
45650 |
T |
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| Q |
870 |
tacttttc |
877 |
Q |
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| T |
45649 |
tacttttc |
45642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 328 - 600
Target Start/End: Complemental strand, 46279 - 46007
Alignment:
| Q |
328 |
aatcatcataatagtttcattattattgttcaattaggtcaacgaagaaatcgaagctcatattcaggtcacacgcgagatcgaatccagcatcgtcaaa |
427 |
Q |
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| T |
46279 |
aatcatcataatagtttcattattattgttcaattaggtcaacgaagaaatcgaagctcatattcaggtcacacgcgagatcgaatccagcatcgtcaga |
46180 |
T |
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| Q |
428 |
tgcgaagagatggagaatcattttgcaactaaggaagctgaattgatcgaaatctgtggcgttttgcagttcgacactgttggatttgtaactgtcgctg |
527 |
Q |
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| T |
46179 |
tgcgaagagatggagaatcattttgcaactaaggaagctgaattgatcggaatctgtggcgttttgcagttcgacactgttggatttgtaactgtcgctg |
46080 |
T |
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| Q |
528 |
gttagaattattcacttcgcatttcatcttcatagtttaacttatatcattgattattatgatttgttaatta |
600 |
Q |
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| T |
46079 |
gttagaattattcacttcgcatttcatcttcatagtttaacttatatcattgattattatgatttgttaatta |
46007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 51 - 281
Target Start/End: Complemental strand, 46561 - 46331
Alignment:
| Q |
51 |
aagaaactattaaaaaagccccaaata--tttgagagagtgggggcccaaactaagaaatcaacacgcgcgggacacatgaaactgaactgttgaaaatt |
148 |
Q |
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| T |
46561 |
aagaaactattaaaaaaggcccaaaaacatttaagagagtggg--cccaatctaagaaatcaacacgcgcgggacacatgatactgaactgttgaaaatt |
46464 |
T |
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| Q |
149 |
gaaatgtggcggtaactctcattcattcaaagcgtttgtcgcattgcgtaacagaacaacacaacaatggaagattcaggaacgattctctctcacattt |
248 |
Q |
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| T |
46463 |
gaaatgtggcggtaactctcattcattcaaagcgtttgtcgcattgcgtaacagaacaacacaacaatggaagattcaggaacgattctctctcacattt |
46364 |
T |
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| Q |
249 |
catctctcaaggaaatgctcgatcaggtaccta |
281 |
Q |
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| T |
46363 |
catctctcaaggaaatgctcgatcaggtaccta |
46331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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