View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17390_low_2 (Length: 596)
Name: NF17390_low_2
Description: NF17390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17390_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 230 - 575
Target Start/End: Complemental strand, 12274059 - 12273714
Alignment:
| Q |
230 |
caatatatatctagttgtgttgcgtgtgtcgaagttatgttggtgtctgataccgacacatgttggatgttcatgacctctctttattaagccgaattat |
329 |
Q |
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| T |
12274059 |
caatatatatctagttgtgtcgcgtgtgtcaaagttatgttggtgtctgataccgacacatgttggatgttcatgacctctctttattaagccgaattat |
12273960 |
T |
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| Q |
330 |
cattgttatacatagcaactaacaagtgaaacttgttaatatcataaaaatcaagcttatcaatacaacaatatcttgaagcatatcataaaaattcaag |
429 |
Q |
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| T |
12273959 |
cattgttatacatagcaactaacaagtgaaacttgttaatatcataaaaatcaagcttatcaatacaacaatatcttgaagcatatcataaaaattcaag |
12273860 |
T |
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| Q |
430 |
caatcatttgacacctaccagctgaagagtcccacttgcatggccagaagcacctgaagctataatttgaacagttcttgctctagcaacaattgttgga |
529 |
Q |
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| T |
12273859 |
caatcatttgacacctaccagctgaagagtcccacttgcatggccagaagcacctgaagctataatttgaacagttcttgctctagcaacaattgttgga |
12273760 |
T |
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| Q |
530 |
aacaattccatccatttttgctataaaacatacaaggtaaagaaag |
575 |
Q |
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| T |
12273759 |
aacaattccatccatttttgctataaaacatacaaggtaaagaaag |
12273714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 12274276 - 12274155
Alignment:
| Q |
11 |
tcgaagaatatgagtctctctggtggacaccaacggagaaagaacttggaattctgcgtgcatctgttcgcaaaaatatgcaatatgttagtgttcattc |
110 |
Q |
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| T |
12274276 |
tcgaagaaaatgagtctctctggtggacaccaacggagaaagaacttggaattctgcgtgcatctgttcgcaaaaatatgcaatatgttagtgttcattc |
12274177 |
T |
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| Q |
111 |
aatattcaaatagcaactttag |
132 |
Q |
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| T |
12274176 |
aatattcaaatagcaattttag |
12274155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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