View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17390_low_3 (Length: 340)
Name: NF17390_low_3
Description: NF17390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17390_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 4510549 - 4510222
Alignment:
| Q |
1 |
caatgacttgaatgttcttctcaggccaattcctaagtacttcaagaatccttcctctttatacctcacccaagagaaatcgaacaattattttgcgatg |
100 |
Q |
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| T |
4510549 |
caatgacttgaatgttcttctcaggccaattcctaagtacttcaagaatccttcctctttatacctcagccaagagaaatcgaacaattattttgcgatg |
4510450 |
T |
|
| Q |
101 |
aataatagacacagtatataaaaattcaatcataagtgcatatcaaaaattaaaagaggataaaggaacaattgaaatgaaacttacttctctttcaagc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4510449 |
aataatagacacggtatataaaaattcaatcataagtgcatatcaaaaattaaaagaggataaaggaacaattgaaatgaaacttacttctctttcaagc |
4510350 |
T |
|
| Q |
201 |
ttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaaccgggagtaactcctcaacatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4510349 |
ttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaaccgggagtaactcctcaacatg |
4510250 |
T |
|
| Q |
301 |
atcaataagaagcttgtaaaacagccct |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
4510249 |
atcaataagaagcttgtaaaacagccct |
4510222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 323
Target Start/End: Original strand, 43208553 - 43208691
Alignment:
| Q |
185 |
tacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaaccggga |
284 |
Q |
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| T |
43208553 |
tacttctctttcaaactaatatatagaccctgaggacgcttgtatatgctcccatatttttggcaagcctcaccaacaaccggagtatatacaattggga |
43208652 |
T |
|
| Q |
285 |
gtaactcctcaacatgatcaataagaagcttgtaaaaca |
323 |
Q |
| |
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| T |
43208653 |
gcaattcctcgacgttgtcaataagaagtttgtaaaaca |
43208691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 180 - 324
Target Start/End: Original strand, 43434190 - 43434334
Alignment:
| Q |
180 |
aaacttacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaac |
279 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||| ||| |||| || ||| ||| |||||||||||||| ||||||||||| |||||||| |||| |
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| T |
43434190 |
aaacttacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgtatttctggcaagcctcaccaacagttggagtatacacaat |
43434289 |
T |
|
| Q |
280 |
cgggagtaactcctcaacatgatcaataagaagcttgtaaaacag |
324 |
Q |
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| T |
43434290 |
tgggagtaattcttcaacgtgatcaatgagaagtttgtaaaacag |
43434334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 43434011 - 43434060
Alignment:
| Q |
3 |
atgacttgaatgttcttctcaggccaattcctaagtacttcaagaatcct |
52 |
Q |
| |
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|||||||||||||||||||||||||| || || |||||||| ||||||| |
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|
| T |
43434011 |
atgacttgaatgttcttctcaggccagtttctcagtacttcttgaatcct |
43434060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 51496676 - 51496586
Alignment:
| Q |
236 |
ccatatttctggcaagcttcaccaacagtcggagtataaacaaccgggagtaactcctcaacatgatcaataagaagcttgtaaaacagcc |
326 |
Q |
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|||||||||||||| ||||| ||||| || ||||| |||||||| || || || || || |||| ||| || | ||||||||||||||||| |
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| T |
51496676 |
ccatatttctggcaggcttctccaactgttggagtgtaaacaacaggtagcaattcttcgacattatcgatcataagcttgtaaaacagcc |
51496586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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