View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17391_high_1 (Length: 578)
Name: NF17391_high_1
Description: NF17391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17391_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 169 - 575
Target Start/End: Original strand, 4592527 - 4592936
Alignment:
| Q |
169 |
cagatgtagcagaccaagttgatgtgttttaatattaaactagtttcctaccaaagtgctatataccaattgtatggttttaaatcgaatttgagatctt |
268 |
Q |
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| T |
4592527 |
cagatgtagcagaccaagttgatgtgtttttatattaaactagtttcctaccaaagtgctatataccaattgtatggttttaaatcgaatttgagatctt |
4592626 |
T |
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| Q |
269 |
tataacagcatcacagcagttat---ttcaattgcatcagccacatttttccgcaatataaagaaggttcatagtataacagaatccataatttaaaact |
365 |
Q |
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| T |
4592627 |
tgtaacggcatcacagcagttattatttcaattgcatcagccacatttttccgcaatataaagaaggttcatagtataacagaatccataatttaaaact |
4592726 |
T |
|
| Q |
366 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaatacaatgaaaagattacataactaaacatggcatctcaaaatc |
465 |
Q |
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| T |
4592727 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaatacaatgaaaagattacataactaaacatagcatctcaaaatc |
4592826 |
T |
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| Q |
466 |
tcaccagatttaattaaacatataccatatgatttatgccaaatctaccatcaaatataattgatattcaaaccaatactcacccaacagaaaatcaacc |
565 |
Q |
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| T |
4592827 |
tcaccagatttaattaaacatataccatatgatttatgccaaatctaccatcaaatataattgatattcaaagcaatacttacccaacagaaaatcaacc |
4592926 |
T |
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| Q |
566 |
tttgtttcat |
575 |
Q |
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| T |
4592927 |
tttgtttcat |
4592936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 4592247 - 4592395
Alignment:
| Q |
18 |
attaatctagaccaatgttttactctagagaccaattatgctaaagcaatgcaatcataaatcgataacaaaaattaacatgccctgtcatgatttgctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592247 |
attaatctagaccaatgttttactctagagaccaattatgctaaagcaatgcaatcataaatcgataacaaaaattaacatgccctgtcatgatttgctg |
4592346 |
T |
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| Q |
118 |
tcagcatttcctactgtggtagtctcggccataggtcaaagatcggacg |
166 |
Q |
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| T |
4592347 |
tcagcatttcctactgtggtagtctcggccatatgtcaaagatcggacg |
4592395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 4584525 - 4584575
Alignment:
| Q |
100 |
ccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccata |
150 |
Q |
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| T |
4584525 |
ccctgtcatgatttgcagtcagcatttcctactgttgtaatctcggccata |
4584575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 4584970 - 4585028
Alignment:
| Q |
366 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaatac |
425 |
Q |
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| T |
4584970 |
atgataccagtaaaaatggaactaaa-atgaaaatctgaaagcttgataatccctaatac |
4585028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 4584743 - 4584787
Alignment:
| Q |
169 |
cagatgtagcagaccaagttgatgtgttttaatattaaactagtt |
213 |
Q |
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| T |
4584743 |
cagatgtagcagacgaagttgatgcgttttcgtattaaactagtt |
4584787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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