View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17391_low_2 (Length: 553)
Name: NF17391_low_2
Description: NF17391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17391_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Complemental strand, 15517339 - 15516814
Alignment:
| Q |
18 |
cagttccttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaa |
117 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |
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| T |
15517339 |
cagttccttcttcataaccttctaccatggttcgatgtggattcctagttgcatttcaatattttctttccttccaatacttttgtacataggtttgcaa |
15517240 |
T |
|
| Q |
118 |
ttttcattgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15517239 |
ttttcattgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaata |
15517140 |
T |
|
| Q |
218 |
ttattgtaaggaaaatgctaattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaatcatatatcactca |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15517139 |
ttattgtaaggaaaatgcttattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaatcatatatcactca |
15517040 |
T |
|
| Q |
318 |
atctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaattaaagtggtaatgtattttttgaattgtttct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
15517039 |
atctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaattaaagtggtaatgtattatttgaattgtttct |
15516940 |
T |
|
| Q |
418 |
agaagtgttgacgttttattacattatggaataatgtagcttctatatttgttcttccttataagggagctttagtctatttaattggtgtgaatatatt |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15516939 |
agaagtgttgacgttttattacattatggaataatgtagcttctatatttgttcttccttataagggagctttagtctatttaattggtgtgaatatatt |
15516840 |
T |
|
| Q |
518 |
ttaaacttttatctcctcatcctatg |
543 |
Q |
| |
|
||||| |||||||||||||||||||| |
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|
| T |
15516839 |
ttaaaattttatctcctcatcctatg |
15516814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 15533852 - 15533430
Alignment:
| Q |
18 |
cagttccttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15533852 |
cagttccttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatattttctttcctcccaatacttttgtacataggtttgcaa |
15533753 |
T |
|
| Q |
118 |
ttttcattgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatcta--tgtgatagaggagtagaggaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
15533752 |
ttttcattgttttcagatatcatttactcaacctactattggaggactctgtttaaacctggtaaaaatatgatttatgtgtgatagaggagtagaggaa |
15533653 |
T |
|
| Q |
216 |
tattattgtaaggaaaatgctaattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaatcatatatcact |
315 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
15533652 |
tattattgcaaggaaaatggttattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaattata-atcact |
15533554 |
T |
|
| Q |
316 |
caatctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaattaaagtggtaatgtattttttgaattgttt |
415 |
Q |
| |
|
|||||| |||||||| ||||||||||| | |||||||||||||| | ||||||||||||||||||||| |||||| ||||| |
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|
| T |
15533553 |
caatctttcatgtatggtcagcagaatc-------------------ttattaattgttttttctaaaattaaagtggtaatgtattatttgaagtgttt |
15533473 |
T |
|
| Q |
416 |
ctagaagtgttgacgttttattacattatggaataatgtagct |
458 |
Q |
| |
|
||| ||||||||| ||| || ||||||| ||||||||||||| |
|
|
| T |
15533472 |
ctaaaagtgttgatgttagataacattatagaataatgtagct |
15533430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 15493510 - 15493306
Alignment:
| Q |
21 |
ttccttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaattt |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
15493510 |
ttccttcttcataatatactaccatggttcgatgtggattcctagttgcattacaatactttccttcctcccaatacttttgtatatacgtttgcaattt |
15493411 |
T |
|
| Q |
121 |
tcattgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaatatta |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||| |
|
|
| T |
15493410 |
aaattgttttctgatatcatttactcaacctactattggaagactctatctaagcttggtaaaaatatgatttatgtactagagaagtagaggattatta |
15493311 |
T |
|
| Q |
221 |
ttgta |
225 |
Q |
| |
|
||||| |
|
|
| T |
15493310 |
ttgta |
15493306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 15654299 - 15654050
Alignment:
| Q |
24 |
cttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaattttca |
123 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| ||| ||||||| || |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15654299 |
cttcttcatagtatactaccatggtttgatgtgggttcctggtttcatttcagtattttctttcctcccaatacttttgtacatatgtttgcaattttcg |
15654200 |
T |
|
| Q |
124 |
ttgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaatattattg |
223 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
|
|
| T |
15654199 |
ttgttttcagatatcatttactcaacatactactggagtactctatctaagcctggtaaaaatatgatttatgtactagagaagtagtggattattattg |
15654100 |
T |
|
| Q |
224 |
taaggaaaatgctaattgttatgagagaaatttgacaagaaacacaagaa |
273 |
Q |
| |
|
|||| |||||| |||||||| | |||| ||||| || |||| |||||| |
|
|
| T |
15654099 |
taagaaaaatgtgtattgttataacagaagtttgataataaactcaagaa |
15654050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 15624622 - 15624372
Alignment:
| Q |
24 |
cttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaattttca |
123 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || | |||| |||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15624622 |
cttcttcataatatacttccatggttcgacgttggttcccagtttcatttcaatattttctttcctcccaatacctttgtacataggtttgcaattttcg |
15624523 |
T |
|
| Q |
124 |
ttgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaatattattg |
223 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||||||||| ||||| ||||| ||||| ||| |||| ||| |
|
|
| T |
15624522 |
ttgttttcagatatcattaactcaacctactattggaggactctgtctaaccatggtaaaaatatgatttatgtactagagaagtagtggattattgttg |
15624423 |
T |
|
| Q |
224 |
taaggaaaatgctaattgttatgagagaaatttgacaagaaacacaagaatc |
275 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||| | |||| |||||||| |
|
|
| T |
15624422 |
-aaggaaaatgtttattgttatgagagaagtttgatgataaacgcaagaatc |
15624372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 15591834 - 15591573
Alignment:
| Q |
19 |
agttccttcttcataacatactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
15591834 |
agttccttcttcataatatactaccatgcttcggtgtgggttcctagttgcatttcaattatttccttcctcccaatacttttctacataagtttgcaat |
15591735 |
T |
|
| Q |
119 |
tttcattgttttcagatatcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaatat |
218 |
Q |
| |
|
| || ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| | || ||||| |||| ||||| ||| | | |
|
|
| T |
15591734 |
tctccttgttgtcagatatcatttactcaatctactattggaggactctatctaagcctcgtaaaaat-ttatttatgtactagaaaagtagtggattgt |
15591636 |
T |
|
| Q |
219 |
tattgtaaggaaaatgctaattgttatg-agagaaatttgacaagaaacacaagaatcttatg |
280 |
Q |
| |
|
|| |||||||||||| | ||||||| | |||||| ||||| || |||| |||||||| |||| |
|
|
| T |
15591635 |
taccgtaaggaaaatgtttattgttacgaagagaagtttgataataaacgcaagaatcctatg |
15591573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 36 - 273
Target Start/End: Complemental strand, 15645235 - 15644999
Alignment:
| Q |
36 |
atactaccatggttcgatgtggattcctagttgcatttcaatagtttccttcctcccaatacttttgtacataggtttgcaattttcattgttttcagat |
135 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15645235 |
atactaccatggttcgacgtgggttcctggtttcatttcagtattttctttcctcccaatacttttgtacataggtttgcaattttcactgttttcagat |
15645136 |
T |
|
| Q |
136 |
atcatttactcaacctactattggagaactctatctaagcctggtaaaaatatgatctatgtgatagaggagtagaggaatattattgtaaggaaaatgc |
235 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| |||||| |||||| |
|
|
| T |
15645135 |
atcattaactcaatctactattggaggactctgtctaagcctggtaaaaatatgatttatgtactagagaagtagtagattatta-tgtaagaaaaatgt |
15645037 |
T |
|
| Q |
236 |
taattgttatgagagaaatttgacaagaaacacaagaa |
273 |
Q |
| |
|
|||||||| | |||| ||||| || |||| |||||| |
|
|
| T |
15645036 |
gtattgttataacagaagtttgataataaactcaagaa |
15644999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 43987348 - 43987425
Alignment:
| Q |
227 |
ggaaaatgctaattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
304 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||||||| ||||||| |||||| | |||| ||||||||||||| |
|
|
| T |
43987348 |
ggaaaatgcttattgttactagagaaatctgacaagaaacttaagaatcctatgtgacttcatgtaacacttacaaat |
43987425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 36744566 - 36744494
Alignment:
| Q |
232 |
atgctaattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
304 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
36744566 |
atgcttattgttacgagagaagtttgacaagaaacttaagaatccattgtggcagcatgtaacacttacaaat |
36744494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 35816964 - 35816914
Alignment:
| Q |
254 |
tttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
304 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
35816964 |
tttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaat |
35816914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 8459007 - 8459064
Alignment:
| Q |
247 |
agagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
304 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||| |||||| |||||| |||||| |
|
|
| T |
8459007 |
agagaaatttgataagaaacacaaaaattctatgtggtagcatgtaacactcacaaat |
8459064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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