View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17391_low_3 (Length: 529)
Name: NF17391_low_3
Description: NF17391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17391_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 513
Target Start/End: Original strand, 55330041 - 55330551
Alignment:
| Q |
13 |
aatattgaactaaatgcgtggatataaatggtggatgatctagtagcaggtagctatgatactacattataatttgtggttgggtctaatacaacctcac |
112 |
Q |
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| T |
55330041 |
aatattgaactaaatgcgtggatataaatggtggatgatctagtaacaggtagctatgatactacgttataatttatggttggacttaatacaacctcac |
55330140 |
T |
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| Q |
113 |
agaaccgaattgtggtaa---------------atgaacacttg----tttaagctatctcccaaccaatgtgatactcttttaccatcgagtttttcac |
193 |
Q |
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| T |
55330141 |
aaaaccgacttatggtaagaattgagcacactcataaacacttgcttgtttaagctatctcccaaccaatatgatactcttttaacatcgagtttttcac |
55330240 |
T |
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| Q |
194 |
gaatcctcattggataccgttacaaaattttcattttttggcaatacatctccactaaactcaatattttgttacataaattataaaataaacatctgta |
293 |
Q |
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| T |
55330241 |
gaatcctcgttggataccgttacaaaattttcattttttggcaatacatctccactaaactcaatattttgttacataaattataaaataaacatctgta |
55330340 |
T |
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| Q |
294 |
cacaaagaataggaaaacatgttttcacatataattaaaaaatgaatttaatgaatcaacgttatgtgcagttgaaacaaattgctcactaatccagcta |
393 |
Q |
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| T |
55330341 |
cacaaagaataggaaaacatgttttcacatataattaaaa---------aatgaatcaatgttatgtgcaattgaaacaacttgctcactaatccagcta |
55330431 |
T |
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| Q |
394 |
catcagtttccttgtgtcatacgcaattagaagagcttgttagcaaattcatcaacatcaattcctttcattcgacaagaacctgattttgaagcaagct |
493 |
Q |
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| T |
55330432 |
catcagtttccttgtgtcatacgcaattagaacagcttgttagcaaattcatcaacatcaattcctttcattcgacaagaacctgattttgaagcaagct |
55330531 |
T |
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| Q |
494 |
ctctcatctcagaaacattt |
513 |
Q |
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| T |
55330532 |
ctctcatctcagaaacattt |
55330551 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 11234299 - 11234259
Alignment:
| Q |
79 |
ttataatttgtggttgggtctaatacaacctcacagaaccg |
119 |
Q |
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| T |
11234299 |
ttataatttgtggttgggcctaatacaaccccacaaaaccg |
11234259 |
T |
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