View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17391_low_5 (Length: 238)
Name: NF17391_low_5
Description: NF17391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17391_low_5 |
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| [»] scaffold0874 (1 HSPs) |
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Alignment Details
Target: scaffold0874 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 338 - 113
Alignment:
| Q |
13 |
catcaccatcattggataaaaccctccttgcactccctttattcccgaaattgccatcaaaactcgctccattcctcgcatgtgaaggagaagaacgctc |
112 |
Q |
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| T |
338 |
catcaccatcgttggataaatccctccttgcactccctttattcccgaaattgccatcaaaactcgctccattcctcgcatgtgaaggagaagaacgctc |
239 |
T |
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| Q |
113 |
tgcatcatccgacccatctacaccctttggaataaacttccttccattcccgtgcttcctcattctagcatcaatatttgatccattcctcctagaattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
238 |
tgcatcatccgacccatctacaccctttggaataaacttccttccattcccgtgcttcctcattctagcatcaatatttgatccattcctcccagaattc |
139 |
T |
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| Q |
213 |
aaagaagaataaggatcttcattatc |
238 |
Q |
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|||||||||||||||||||||||||| |
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| T |
138 |
aaagaagaataaggatcttcattatc |
113 |
T |
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