View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17392_high_4 (Length: 293)
Name: NF17392_high_4
Description: NF17392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17392_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 30979019 - 30978743
Alignment:
| Q |
15 |
aggaaagaccactttcacacaatttctctatttaatttgctaagcaatatccaaatacagtagtggcagatgaagtacacctgatgagatcttcactttc |
114 |
Q |
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| T |
30979019 |
aggaaagaccactttcacacaatttctctatttaatttgctaagcaatatccaaatacagtagtggcagatgaagtacacctgatgagatcttcactttc |
30978920 |
T |
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| Q |
115 |
accctcaaaataaa-ttnnnnnnncttcaacatgaagctatttttggatcatcagcttctctctctccctcaactctgaatttgtaagagatccactcat |
213 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30978919 |
accctcaaaataaatttaaaaaaacttcaacatgaagctatttttggatcatcagtttctctctctccctcaactctgaatttgtaagagatccacacat |
30978820 |
T |
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| Q |
214 |
cttcctcaataattattattacttgaacataatcaaattttacttta-nnnnnnncaatattttatttcttctctct |
289 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30978819 |
cttcctcaatatttattattacttgaacataatcaaattttactttattttttttcaatattttatttcttctctct |
30978743 |
T |
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