View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17392_low_1 (Length: 850)
Name: NF17392_low_1
Description: NF17392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17392_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 735; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 15 - 838
Target Start/End: Original strand, 3232718 - 3233540
Alignment:
| Q |
15 |
aaaatcaacccatggctacattcaacacctttagtttattaccaatagtaatagcttattgtgctttgttagttcaaaccggaatttcatctcatgttca |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3232718 |
aaaatcaacccatggcaacattcaacacctttagtttattaccaatagtaatagcttattgtgctttgttagttcaaaccggaatttcatctcatgttca |
3232817 |
T |
|
| Q |
115 |
actatcaaatgatccccctcctcatgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtgcaacaaagttataccaaccatgtggtgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3232818 |
actatcaaatgatccccctcctcatgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtgcaacaaagttataccaaccatgtggtgat |
3232917 |
T |
|
| Q |
215 |
gaaattttctttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggtgggaaaacaatgtcatgacgacatga |
314 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3232918 |
gaaatattctttagtatatttttcggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggtgggaaaacaatgtcatgacgacatga |
3233017 |
T |
|
| Q |
315 |
caaaatatattttggcatcagaaaatttcaagaagnnnnnnncttcaattttggaaaggagttggaaagtttgggattcctgtgtctcttctttactaaa |
414 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3233018 |
caaaatatatttttgcatcagaaaatttcaagaagaaaaaaacttcaattttggaaaggagttggaaagtttgggattcttgtgtctcttctttactaaa |
3233117 |
T |
|
| Q |
415 |
tatccctcctgtagcagatccttatgtatttaactcaatagatcctaatgtatttaactttaacccattcgatcatatttaactttaattaggtatctcg |
514 |
Q |
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| T |
3233118 |
tatccctcctgtagcagatccttatgtatttaactcaatagatcctaatgtatttaactttaacccattcgatcatatttaactttaattaggtatctcg |
3233217 |
T |
|
| Q |
515 |
tgcaaatttaaaagattgtacaacttgatatctaataaattgnnnnnnnnnatgctgcaagtgttggaattatgtttggaatatcaacaaatactaaaac |
614 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3233218 |
tgcaaatttaaaagattgtacaacttgatatctaataaattg-ttttttttatgctgcaagtgttggaattatgtttggaatatcaacatatactaaaac |
3233316 |
T |
|
| Q |
615 |
tttgtataaatagttgttttggttttcacctatgatcattgtgtttaacacttaatattttcctgtgacaaatgttattacgtcaattgttctgttaata |
714 |
Q |
| |
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| T |
3233317 |
tttgtataaatagttgttttggttttcacctatgatcattgtgtttaacacttaatattttcctatgacaaatgttattacgtcaattgttctgttaata |
3233416 |
T |
|
| Q |
715 |
ttttcttcatgtaaatcgaaccttaaaaatgtaactcgttgactcctttaatctctagctcaaccaagtgagctacccatcccttaatattaattgatag |
814 |
Q |
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| T |
3233417 |
ttttcttcatgtaaatcgaaccttaaaaatgtaactctttgactcctttaatctctagctcaaccaagtgagctatccatcccttaatattaattgatag |
3233516 |
T |
|
| Q |
815 |
cataataagccaatatgcatatat |
838 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3233517 |
cataataagccaatatgcatatat |
3233540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 24 - 475
Target Start/End: Original strand, 3235312 - 3235772
Alignment:
| Q |
24 |
ccatggctacattcaacacctttagtttattaccaatagtaatagcttattgtgctttgttagttcaaaccggaatttcatctcatgttcaactatcaaa |
123 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||| || |||||| ||||||||||||| |||| |||||||||||||||| |||| ||||||| |
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| T |
3235312 |
ccatggctacattcaatacttttagtttattaccaatagtattaacttattttgctttgttagttgaaactggaatttcatctcatgctcaagtatcaaa |
3235411 |
T |
|
| Q |
124 |
tgatccccctcctcatgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtgcaacaaagttataccaaccatgtggtgatgaaattttc |
223 |
Q |
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| T |
3235412 |
tgaaccccctcttgatgcatcaacccagccatcattgtttgaaaagcatttaaaaaattgtgctacaaaggtataccaaccatgtggtgatgagattttc |
3235511 |
T |
|
| Q |
224 |
tttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggtgggaaaacaatgtcatgacgacatgacaaaatata |
323 |
Q |
| |
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||||||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || |
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| T |
3235512 |
tttagtataaattttgggaatcaaacagttggtaaggaatgttgttttaaccttgtgaatgaagtgggaaaacaatgtcatgatgacatgacaaaagcta |
3235611 |
T |
|
| Q |
324 |
ttttggcatcagaaaatttcaagaagnnnnnnncttcaattttggaaaggagttggaaagtttgggattcctgtgtctcttctttacta---aatatccc |
420 |
Q |
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||||| |||||||| |||| | |||| ||||||| ||| |||||||| |||||||||||||| |||||||||||||||||| |||| ||| |
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| T |
3235612 |
ttttgacatcagaagattttaggaagagcaaaacttcaatattgaaaaggagtgcaaaagtttgggattcttgtgtctcttctttactaaataataaccc |
3235711 |
T |
|
| Q |
421 |
tcctgtagcagatccttatgtatt------taactcaatagatcctaatgtatttaacttt |
475 |
Q |
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| T |
3235712 |
tcagtcagcagatcctaatgtatttaactataactcaatagatcctaatgtatttaacttt |
3235772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 3258702 - 3258785
Alignment:
| Q |
205 |
atgtggtgatgaaattttctttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggt |
288 |
Q |
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|||||||||||| ||||||| || | | |||| ||||||||||||| |||||| ||||||||||| ||||||| | |||||||| |
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| T |
3258702 |
atgtggtgatgagattttctatactgtgttttctggtaatcaaacaactggtactgaatgttgttataaccttattaatgaggt |
3258785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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