View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17392_low_2 (Length: 383)
Name: NF17392_low_2
Description: NF17392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17392_low_2 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 46874257 - 46873889
Alignment:
| Q |
15 |
aatatacatggaaaccaaaaagttgcaattgttataatcatcttgtaattttgctcacaatatgcaaatataagttatcatacactcgcacacaagcgaa |
114 |
Q |
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| T |
46874257 |
aatatacatggaaaccaaaaagttgcaattgttataatcatcttgtaattttgctcacaatatgcaaatataagttatcatacactcgcacacaagcgaa |
46874158 |
T |
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| Q |
115 |
caagannnnnnnaaatataaggtctaggatcacaactgtggctgtgacgtacagatgtcttatgtcttcatcatcacaaatgcagctgcattaaccttat |
214 |
Q |
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| T |
46874157 |
caagatttttttaaatataaggtctaggaccacaactgtggctgagacgtacagatgtcttatgtcttcatcatcacaaatgcagctgcattaaccttat |
46874058 |
T |
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| Q |
215 |
ttgaccgcggtattaaggatcgcggcatggtcgcaatttaaaactttgcaaatgagcaatgcacctcaaaatgattgatgactcggacaatggggttgac |
314 |
Q |
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| T |
46874057 |
ttgaccgcggtattaaggatcgcggcatggtcgcaatttaaaactttgcaaatgagcaatgcacctcaaaattattgatgactcggataatggggttgac |
46873958 |
T |
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| Q |
315 |
gggaaaattcataatttcattcaagtgttatgcaagtgttgttaaatagcggctgcattggagctattg |
383 |
Q |
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| T |
46873957 |
gggaaaattcataatttcattcaagtgttgtgcaagtgttgttaaatagcggctgcattggagctattg |
46873889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 46892058 - 46891771
Alignment:
| Q |
15 |
aatatacatggaaaccaaaaagttgcaattgttataatcatcttgtaatttt-gctcacaatatgcaaatataagttatcatacactcg-cacacaagcg |
112 |
Q |
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| T |
46892058 |
aatatacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatataagttatcatatattttacacacaagcg |
46891959 |
T |
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| Q |
113 |
aacaagannnnnnnaaatataaggtctaggatcacaactgtggctgtgacgtacagatgtct---tatgtcttcat-cat-----cacaaatgcagctgc |
203 |
Q |
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| T |
46891958 |
aacaagatttttttaaatataaggtctgcgaccatgactgtggctgagacgtacagatgcaaatataagttatcatacattcacacacaaatgcagctgc |
46891859 |
T |
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| Q |
204 |
attaaccttatttgaccgcggtattaaggatcgcggcatggtcgcaatttaaaactttgcaaatgagcaatgcacctcaaaatgattg |
291 |
Q |
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| T |
46891858 |
attaaccatatttgaccccaatattaaggatcgcggcatggtcacaatttaaaactttgcaaatgaacaatgtacctcaaaattattg |
46891771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 46891458 - 46891392
Alignment:
| Q |
300 |
gacaatggggttgacgggaaaattcataatttcattcaagtgttatgcaagtgttgttaaatagcgg |
366 |
Q |
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| T |
46891458 |
gacaatgtggttgacggaaaaattcagaatttcattcaagtattatgtaagtgttgttaaatagcgg |
46891392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 46900111 - 46900046
Alignment:
| Q |
300 |
gacaatggggttgacgggaaaattcataatttcattcaagtgttatgcaagtgttgttaaatagcg |
365 |
Q |
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| T |
46900111 |
gacaatggggttgatgggaaaaagcagaatttcattcaagtattatgtaagtgatgtcaaatagcg |
46900046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 46865431 - 46865354
Alignment:
| Q |
18 |
atacatggaaaccaaaaagttgcaattgttataatcatcttgtaat-tttgctcacaatatgcaaatataagttatca |
94 |
Q |
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| T |
46865431 |
atacatggaaaccaaacagtttaaattgttacaatcatcttgaattctttgttcacaatatgtaaatacaagtaatca |
46865354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 27300716 - 27300646
Alignment:
| Q |
18 |
atacatggaaaccaaaaagttgcaattgttataatcatcttgt-aattttgctcacaatatgcaaatataa |
87 |
Q |
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| T |
27300716 |
atacatgaaaaccaaatagtttcaattgttataatcatcttgtaaattttgtacaaaatattcaaatataa |
27300646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 27310638 - 27310556
Alignment:
| Q |
18 |
atacatggaaaccaaaaagttgcaattgtt-ataatcatcttgtaa-ttttgctcacaatatgcaaatataagttatcataca |
98 |
Q |
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| T |
27310638 |
atacatgaaaaccaaatagtttcaattgtttataattatcttgtaatttttgtccacaatattcaaatataacttatcataca |
27310556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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