View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17392_low_3 (Length: 317)
Name: NF17392_low_3
Description: NF17392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17392_low_3 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 40409487 - 40409788
Alignment:
| Q |
13 |
aagaatatgagtacgtactagtgaatactaaagattacttttagattgcattaacgttggctaatcctttaaatcagaaactgctcttgtcatagacaaa |
112 |
Q |
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| T |
40409487 |
aagaaaatgagtacgtactagtgaatactatagattacttttagattgcattaacgttggctaatcccttaaatcagaaactgctcttgccatagacaaa |
40409586 |
T |
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| Q |
113 |
ttaaattttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtc |
212 |
Q |
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| T |
40409587 |
ttaaagtt-gtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaagctgaaaatcacatgtgataccaataagtc |
40409685 |
T |
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| Q |
213 |
catgcacaaatgacaacgagaaggaaggtttgagttcctcttacattcaatcataatcaaatcaagatctaggaacacttgtgcagaagaaggtgaagtc |
312 |
Q |
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| T |
40409686 |
catgcagaaatgaca--gagaaggaaggtttgagttcctcttacattcaagcatcatcaaatcaagatctaggaacacttgtgcagaagaaggtgaagtc |
40409783 |
T |
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| Q |
313 |
actta |
317 |
Q |
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||||| |
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| T |
40409784 |
actta |
40409788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 40456857 - 40456739
Alignment:
| Q |
120 |
ttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtccatgcac |
219 |
Q |
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| T |
40456857 |
ttgtagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaac |
40456758 |
T |
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| Q |
220 |
aaatgacaacgagaaggaa |
238 |
Q |
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| T |
40456757 |
aaatgacaacaagaaggaa |
40456739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 40362890 - 40362998
Alignment:
| Q |
127 |
gcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtccatgcacaaatgac |
226 |
Q |
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||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||| || || |||| ||| |||||||| ||||| ||||||||||| |
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| T |
40362890 |
gcttttgtaggcacgaatatgaatccataaaaaagatagtggaaagggccattgaagctaaatatcaaatgtgataccaattagtccttgcacaaatgat |
40362989 |
T |
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| Q |
227 |
aacgagaag |
235 |
Q |
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||| ||||| |
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| T |
40362990 |
aactagaag |
40362998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 40362688 - 40362724
Alignment:
| Q |
34 |
tgaatactaaagattacttttagattgcattaacgtt |
70 |
Q |
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| T |
40362688 |
tgaatactatagattacttttagattgcattaacgtt |
40362724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 40457066 - 40456962
Alignment:
| Q |
13 |
aagaatatgagtacgtactagtgaatactaaagattacttttagattgcattaacgttggctaatcctttaaatcagaaactgctcttgtcatagacaaa |
112 |
Q |
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||||| |||||||||||||||| ||||||| | ||||||||||| ||| |||| || ||||||||| ||| ||||||| | ||||||| |||||| |
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| T |
40457066 |
aagaaaatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaa |
40456967 |
T |
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| Q |
113 |
ttaaa |
117 |
Q |
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||||| |
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| T |
40456966 |
ttaaa |
40456962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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