View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17392_low_7 (Length: 240)
Name: NF17392_low_7
Description: NF17392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17392_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40409969 - 40410193
Alignment:
| Q |
1 |
tttaaaaagacctgtcaaaactataatgctggcaagaaagtgt-aagagaagtttatatacataaacatcaacttacccttaaatatgagtcagtattct |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40409969 |
tttaaaaagacctgtcaaaactataatgctggcaagaaagtgttaagagaagtttatatacataaacatcaacttacccttaaatatgagtcagtattct |
40410068 |
T |
|
| Q |
100 |
tttaatgttagaaacaatatatttgcatccattgtatcaaaataagtctttacatttccaagtactgtcaattgttaattatgactcttctgatggttgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
40410069 |
tttaatgttagaaacaatatatttgcatccattgtatcaaaataaatctttacatttccaaggactgtccattgttaattatgactcttctaaaggttgt |
40410168 |
T |
|
| Q |
200 |
gtttatttcttaaccatgtttgatt |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40410169 |
gtttatttcttaaccatgtttgatt |
40410193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University