View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17393_high_5 (Length: 235)
Name: NF17393_high_5
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17393_high_5 |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 23253225 - 23253459
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcatttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23253225 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcgtttga |
23253324 |
T |
|
| Q |
101 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23253325 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctctatc |
23253424 |
T |
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| Q |
201 |
ttatgattgtagttaagagtaaactttgtcttatt |
235 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
23253425 |
ttatgattgtagttaagaataaactttgtcttatt |
23253459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 21945123 - 21945241
Alignment:
| Q |
117 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatcttatgattgtagttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21945123 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatcttatgattgtagttaa |
21945222 |
T |
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| Q |
217 |
gagtaaactttgtcttatt |
235 |
Q |
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||||||||||||||||||| |
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| T |
21945223 |
gagtaaactttgtcttatt |
21945241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 53534582 - 53534348
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcatttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53534582 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcgtttga |
53534483 |
T |
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| Q |
101 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53534482 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctctatc |
53534383 |
T |
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| Q |
201 |
ttatgattgtagttaagagtaaactttgtcttatt |
235 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
53534382 |
ttatgattgtagttaagaataaactttgtcttatt |
53534348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42916341 - 42916575
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcatttga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42916341 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcgtttga |
42916440 |
T |
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| Q |
101 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
42916441 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctttatc |
42916540 |
T |
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| Q |
201 |
ttatgattgtagttaagagtaaactttgtcttatt |
235 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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| T |
42916541 |
ttatgattgtagttaagaataaactttgtcttatt |
42916575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4753881 - 4754114
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcatttga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4753881 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagca-aaaatattgatcttaatatcattccaaattctccactgcaattttcgtttga |
4753979 |
T |
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| Q |
101 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4753980 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacatccgtttattgcttcttcacgcctctatc |
4754079 |
T |
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| Q |
201 |
ttatgattgtagttaagagtaaactttgtcttatt |
235 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
4754080 |
ttatgattgtagttaagaataaactttgtcttatt |
4754114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38202120 - 38202062
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgat |
59 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
38202120 |
attcaaatgaaatgcatcatcttcctgatttaaacatcaatgtagcacaaaatattgat |
38202062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 13095946 - 13095712
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13095946 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgatcttaatatcattccaaattctccactgcaattttcatttga |
13095847 |
T |
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| Q |
101 |
cttgaatgtgcaaccatttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13095846 |
cttgaatgtgcaaccatttgatacatgtttgagtgaagatatccaagagtatattggtaagtaactaaacacctgtttattgcttcttcacgcctctatc |
13095747 |
T |
|
| Q |
201 |
ttatgattgtagttaagagtaaactttgtcttatt |
235 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
13095746 |
ttatgattgtagttaggagtaaactttgtcttatt |
13095712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17382058 - 17382001
Alignment:
| Q |
1 |
attcaaatgaaatgcatcatctccccgatttaaacatcaatgtagcacaaaatattgat |
59 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
17382058 |
attcaaatgaaacgcatcatctccc-gatttgaacatcaatgtagcacaaaatattgat |
17382001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 19599200 - 19599315
Alignment:
| Q |
117 |
tttgatacatgtttgaatgaagatgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatcttatgattgtagttaa |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19599200 |
tttgatacatgtttgaatga---tgtccaggagcatattggtaagtaactaaacacccgtttattgcttcttcacgcctctatcttatgattgtagtcaa |
19599296 |
T |
|
| Q |
217 |
gagtaaactttgtcttatt |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19599297 |
gagtaaactttgtcttatt |
19599315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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