View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17393_high_6 (Length: 231)
Name: NF17393_high_6
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17393_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8357818 - 8357626
Alignment:
| Q |
20 |
atcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgca |
119 |
Q |
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| T |
8357818 |
atcatgtattgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatccacgca |
8357720 |
T |
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| Q |
120 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttg |
213 |
Q |
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| T |
8357719 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttg |
8357626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 39293908 - 39294100
Alignment:
| Q |
20 |
atcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgca |
119 |
Q |
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| T |
39293908 |
atcatgtattaaatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatccacgca |
39294006 |
T |
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| Q |
120 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttg |
213 |
Q |
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| T |
39294007 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggcctttcataatggaccttg |
39294100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 35212811 - 35212746
Alignment:
| Q |
122 |
ggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagct |
187 |
Q |
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| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagct |
35212746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 44000374 - 44000181
Alignment:
| Q |
20 |
atcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgca |
119 |
Q |
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| T |
44000374 |
atcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccacgca |
44000275 |
T |
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| Q |
120 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttg |
213 |
Q |
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| T |
44000274 |
caggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttgataatggaccttg |
44000181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 26894376 - 26894437
Alignment:
| Q |
86 |
tcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctga |
147 |
Q |
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| T |
26894376 |
tcaggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
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