View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17393_low_1 (Length: 526)

Name: NF17393_low_1
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17393_low_1
NF17393_low_1
[»] chr6 (6 HSPs)
chr6 (18-328)||(5014160-5014470)
chr6 (346-385)||(5014102-5014141)
chr6 (346-385)||(16693040-16693079)
chr6 (482-515)||(5013972-5014005)
chr6 (268-321)||(16692960-16693013)
chr6 (285-319)||(595542-595576)
[»] chr1 (13 HSPs)
chr1 (273-328)||(18431702-18431757)
chr1 (273-321)||(22788456-22788504)
chr1 (273-323)||(7786796-7786846)
chr1 (482-515)||(18431525-18431558)
chr1 (273-328)||(6154642-6154697)
chr1 (346-385)||(18431650-18431689)
chr1 (273-319)||(33403427-33403473)
chr1 (482-515)||(22788277-22788310)
chr1 (273-318)||(37187914-37187959)
chr1 (287-319)||(2123859-2123891)
chr1 (287-319)||(32940712-32940744)
chr1 (287-319)||(38741000-38741032)
chr1 (287-319)||(50158606-50158638)
[»] chr2 (3 HSPs)
chr2 (273-328)||(16916433-16916488)
chr2 (346-385)||(16916383-16916422)
chr2 (482-515)||(16916258-16916291)
[»] chr7 (6 HSPs)
chr7 (270-328)||(46437306-46437364)
chr7 (273-323)||(38663006-38663056)
chr7 (346-385)||(46437375-46437414)
chr7 (273-318)||(28998023-28998068)
chr7 (482-515)||(46437506-46437539)
chr7 (287-319)||(46913464-46913496)
[»] chr5 (4 HSPs)
chr5 (268-328)||(424823-424883)
chr5 (273-322)||(18113831-18113880)
chr5 (273-321)||(25634440-25634488)
chr5 (287-319)||(34225693-34225725)
[»] chr8 (3 HSPs)
chr8 (273-321)||(28535196-28535244)
chr8 (293-322)||(11464468-11464497)
chr8 (287-319)||(29247177-29247209)
[»] chr3 (8 HSPs)
chr3 (273-321)||(26555479-26555527)
chr3 (273-323)||(2125267-2125317)
chr3 (273-321)||(28211740-28211788)
chr3 (273-318)||(22418556-22418601)
chr3 (482-515)||(26555669-26555702)
chr3 (286-319)||(43055608-43055641)
chr3 (287-319)||(498035-498067)
chr3 (287-319)||(50385874-50385906)
[»] chr4 (2 HSPs)
chr4 (273-322)||(8903210-8903259)
chr4 (287-319)||(2917958-2917990)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 5014470 - 5014160
Alignment:
Q  18 cttcaaagttgattggattttcgtggatatgaataactggtaaagtaataattaccagaaaagacaagatcaactaatcttgcatgctattatcatttct 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5014470 cttcaaagttgattggattttcgtgggtatgaataactggtaaagtaataattactagaaaagacaagatcaactaatcttgcatgctattatcatttct 5014371  T
Q  118 attagtatcatcattgcccttgatagtgtgaaaacctcacaacaagtttgaaacactctcaataaaatgttttccgataagactcatgctcgtatcatgc 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5014370 attagtatcatcattgcccttgacagtgtgaaaacctcacaacaagtttgaaacactctcaataaaatgttttccgataagactcatgctcgtatcatgc 5014271  T
Q  218 atctcaaggaaagactctctaaattcactgaagcatctagtcatattgccaacaagggcggatgtagagtgaaacatggtgtggcagctgccacaccaga 317  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5014270 atctcaaggaaagactctctaaattcaccgaagcatccagtcatattgccaacaagggcggatgtagagtgaaacatggtgtggcagctgccacaccaga 5014171  T
Q  318 ttctaacctaa 328  Q
    |||||||||||    
T  5014170 ttctaacctaa 5014160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 5014141 - 5014102
Alignment:
Q  346 atatgcataaacataaggcatgggaaggaaagtggaaatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5014141 atatgcataaacataaggcatgggaaggaaagtggaaatt 5014102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 16693040 - 16693079
Alignment:
Q  346 atatgcataaacataaggcatgggaaggaaagtggaaatt 385  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16693040 atatgcataaacataaggcaagggaaggaaagtggaaatt 16693079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 5014005 - 5013972
Alignment:
Q  482 acaaatcacaattcacaatcgtctttcttctcac 515  Q
    ||||||||||||||||||||||||||||||||||    
T  5014005 acaaatcacaattcacaatcgtctttcttctcac 5013972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 16692960 - 16693013
Alignment:
Q  268 aacaagggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 321  Q
    |||| ||||||||  || |||||||||||||||| |||||||||||||||||||    
T  16692960 aacaggggcggattgagtgtgaaacatggtgtggtagctgccacaccagattct 16693013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 595542 - 595576
Alignment:
Q  285 agtgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||||| ||||||||||||||    
T  595542 agtgaaacatggtgtggcagttgccacaccagatt 595576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 18431757 - 18431702
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18431757 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaa 18431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 22788504 - 22788456
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 321  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||    
T  22788504 gggcggatggagtgtgaaacatggtgtggcaactgccacaccagattct 22788456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 7786846 - 7786796
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaa 323  Q
    |||||||  ||| |||||||||||||||||||||| |||||||||||||||    
T  7786846 gggcggagttagtgtgaaacatggtgtggcagctgtcacaccagattctaa 7786796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 18431558 - 18431525
Alignment:
Q  482 acaaatcacaattcacaatcgtctttcttctcac 515  Q
    ||||||||||||||||||||||||||||||||||    
T  18431558 acaaatcacaattcacaatcgtctttcttctcac 18431525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 6154697 - 6154642
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 328  Q
    |||||||||||   |||||||||||||| ||||||| ||||||||||||| |||||    
T  6154697 gggcggatgtacgttgaaacatggtgtgacagctgcaacaccagattctagcctaa 6154642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 18431689 - 18431650
Alignment:
Q  346 atatgcataaacataaggcatgggaaggaaagtggaaatt 385  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  18431689 atatgcataaacataaggtacgggaaggaaagtggaaatt 18431650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 33403427 - 33403473
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||| || | |||||||||||||||||| ||||||||||||||    
T  33403427 gggcggatctacactgaaacatggtgtggcagttgccacaccagatt 33403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 22788310 - 22788277
Alignment:
Q  482 acaaatcacaattcacaatcgtctttcttctcac 515  Q
    |||||||||||||||||||| |||||||||||||    
T  22788310 acaaatcacaattcacaatcttctttcttctcac 22788277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 37187914 - 37187959
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagat 318  Q
    |||||||| ||  ||||||||||||||||||| |||||||||||||    
T  37187914 gggcggatctactgtgaaacatggtgtggcagttgccacaccagat 37187959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 2123891 - 2123859
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  2123891 tgaaacatggtgtggcagttgccacaccagatt 2123859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 32940712 - 32940744
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  32940712 tgaaacatggtgtggcagttgccacaccagatt 32940744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 38741000 - 38741032
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  38741000 tgaaacatggtgtggcagttgccacaccagatt 38741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 50158606 - 50158638
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  50158606 tgaaacatggtgtggcagttgccacaccagatt 50158638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 16916488 - 16916433
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 328  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  16916488 gggcggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaa 16916433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 16916422 - 16916383
Alignment:
Q  346 atatgcataaacataaggcatgggaaggaaagtggaaatt 385  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16916422 atatgcataaacataaggcacgggaaggaaagtggaaatt 16916383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 16916291 - 16916258
Alignment:
Q  482 acaaatcacaattcacaatcgtctttcttctcac 515  Q
    ||||||||||||||||||||||||||||||||||    
T  16916291 acaaatcacaattcacaatcgtctttcttctcac 16916258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 46437306 - 46437364
Alignment:
Q  270 caagggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 328  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  46437306 caaggacggatgtagagtgaaacatggtgtggcagctgccacacaagattataacctaa 46437364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 38663006 - 38663056
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaa 323  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  38663006 gggcggagttagtgtgaaacatggtgtggcagctgccacaccagattctaa 38663056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 46437375 - 46437414
Alignment:
Q  346 atatgcataaacataaggcatgggaaggaaagtggaaatt 385  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  46437375 atatgcataaacataaggcacgagaaggaaagtggaaatt 46437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 28998023 - 28998068
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagat 318  Q
    |||||||| ||  ||||||||||||||||||| |||||||||||||    
T  28998023 gggcggatctactgtgaaacatggtgtggcagttgccacaccagat 28998068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 46437506 - 46437539
Alignment:
Q  482 acaaatcacaattcacaatcgtctttcttctcac 515  Q
    ||||| ||||||||||||||||||||||||||||    
T  46437506 acaaaacacaattcacaatcgtctttcttctcac 46437539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 46913496 - 46913464
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  46913496 tgaaacatggtgtggcagttgccacaccagatt 46913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 424883 - 424823
Alignment:
Q  268 aacaagggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 328  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  424883 aacatgggcggatgtacattgaaacatggtgtggcagctgccacaccagattctagcctaa 424823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 18113880 - 18113831
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattcta 322  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  18113880 gggcggatgtacattgaaacatggtgtggcagttgccacaccagattcta 18113831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 25634488 - 25634440
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 321  Q
    |||||||  ||| |||||||||||||||||||||||||||||| |||||    
T  25634488 gggcggagttagtgtgaaacatggtgtggcagctgccacaccaaattct 25634440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 34225693 - 34225725
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  34225693 tgaaacatggtgtggcagttgccacaccagatt 34225725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 28535196 - 28535244
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 321  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  28535196 gggcggatggagtgtgaaacatggtgtggcagctgccacaccagattct 28535244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 322
Target Start/End: Complemental strand, 11464497 - 11464468
Alignment:
Q  293 atggtgtggcagctgccacaccagattcta 322  Q
    ||||||||||||||||||||||||||||||    
T  11464497 atggtgtggcagctgccacaccagattcta 11464468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 29247209 - 29247177
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  29247209 tgaaacatggtgtggcagttgccacaccagatt 29247177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 26555479 - 26555527
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 321  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26555479 gggcggatggagtgtgaaacatggtgtggcagctgccacaccagattct 26555527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 2125267 - 2125317
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaa 323  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  2125267 gggcggagttagtgtgaaacatggtgtggcagctgccacaccagattctaa 2125317  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 28211788 - 28211740
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 321  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  28211788 gggcggagttagtgtgaaacatggtgtggcagctgccacaccagattct 28211740  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 22418556 - 22418601
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagat 318  Q
    |||||||| ||  ||||||||||||||||||| |||||||||||||    
T  22418556 gggcggatctactgtgaaacatggtgtggcagttgccacaccagat 22418601  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 26555669 - 26555702
Alignment:
Q  482 acaaatcacaattcacaatcgtctttcttctcac 515  Q
    |||||||||||||||||||| |||||||||||||    
T  26555669 acaaatcacaattcacaatcttctttcttctcac 26555702  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 43055641 - 43055608
Alignment:
Q  286 gtgaaacatggtgtggcagctgccacaccagatt 319  Q
    ||||||||||||||||||| ||||||||||||||    
T  43055641 gtgaaacatggtgtggcagttgccacaccagatt 43055608  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 498067 - 498035
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  498067 tgaaacatggtgtggcagttgccacaccagatt 498035  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 50385874 - 50385906
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  50385874 tgaaacatggtgtggcagttgccacaccagatt 50385906  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 8903210 - 8903259
Alignment:
Q  273 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattcta 322  Q
    ||||||||||| | || | ||||||||||||||| |||||||||||||||    
T  8903210 gggcggatgtacattgtagcatggtgtggcagctaccacaccagattcta 8903259  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 2917990 - 2917958
Alignment:
Q  287 tgaaacatggtgtggcagctgccacaccagatt 319  Q
    |||||||||||||||||| ||||||||||||||    
T  2917990 tgaaacatggtgtggcagttgccacaccagatt 2917958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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