View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17393_low_2 (Length: 511)
Name: NF17393_low_2
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17393_low_2 |
 | |
|
| [»] scaffold0777 (6 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 142 - 496
Target Start/End: Original strand, 24929767 - 24930120
Alignment:
| Q |
142 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagct |
241 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24929767 |
caccgcttattctcggcgccgctagtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaatccacttcagaaagct |
24929866 |
T |
|
| Q |
242 |
acgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtat |
341 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24929867 |
atgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaattcaccactggtatgt-aattggtgagtcctcaagaagctcatgtggtat |
24929965 |
T |
|
| Q |
342 |
atgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactc |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24929966 |
atgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtagattctcaactc |
24930065 |
T |
|
| Q |
442 |
aacaataatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24930066 |
aacaataatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgt |
24930120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 312 - 484
Target Start/End: Complemental strand, 24976941 - 24976769
Alignment:
| Q |
312 |
tggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgat |
411 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24976941 |
tggtgaatcctcacgaagcttatgtggtatatgctttgatttgaaaacagattcagatatgttcaaaagaaagagttgcaaccacctcttttgtgttgaa |
24976842 |
T |
|
| Q |
412 |
tgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtccaactccaaattgtt |
484 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24976841 |
tgtatttccaaatatgtggtttctcaaattaacaacaatgtggttaaggtgacttgtccaactccaaattgtt |
24976769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 142 - 496
Target Start/End: Complemental strand, 2166 - 1812
Alignment:
| Q |
142 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagct |
241 |
Q |
| |
|
||||||| |||||| ||||| || |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
2166 |
caccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaagcagaagaaactaaagagaaaatccacttcagaaagct |
2067 |
T |
|
| Q |
242 |
acgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2066 |
acgatgaaaagatgaagaaaccattaatcattgatgaggaaccagaagaattcaccactaagatgttaattggtgaatcctcaagaagctcatgtggtat |
1967 |
T |
|
| Q |
342 |
atgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactc |
441 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1966 |
atgctttgatttgaaaactgatttggatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactc |
1867 |
T |
|
| Q |
442 |
aacaataatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1866 |
aacaataatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgt |
1812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 2328 - 2256
Alignment:
| Q |
142 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaac |
214 |
Q |
| |
|
||||||| |||||| ||||| || |||||||||||||||||||||||||| |||||| ||||| |||| |||| |
|
|
| T |
2328 |
caccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaaggagaagaaac |
2256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 2482 - 2418
Alignment:
| Q |
150 |
attctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaac |
214 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
2482 |
attctcggcgccgttagtgataaaagaacagtcagaacatgattctgatgcaaaggagaagaaac |
2418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 2611 - 2560
Alignment:
| Q |
27 |
agattctcaggcaaaggagaagaaaccaaacatgatgaagagaaaaccactt |
78 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2611 |
agattctaatgcaaaggagaagaaaccaaacatgatgaagagaaaatcactt |
2560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 2447 - 2380
Alignment:
| Q |
23 |
aacaagattctcaggcaaaggagaagaaaccaaacatgatgaagagaaaaccacttcgagatgcctat |
90 |
Q |
| |
|
|||| |||||| | |||||||||||||||||| ||||| ||||||||||| |||||| ||||| |||| |
|
|
| T |
2447 |
aacatgattctgatgcaaaggagaagaaaccacacatggtgaagagaaaatcacttccagatggctat |
2380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 2271 - 2218
Alignment:
| Q |
37 |
gcaaaggagaagaaaccaaacatgatgaagagaaaaccacttcgagatgcctat |
90 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||| ||||| |||| |
|
|
| T |
2271 |
gcaaaggagaagaaaccatacatgttgaagagaaaatcacttccagatggctat |
2218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University