View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17393_low_3 (Length: 302)
Name: NF17393_low_3
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17393_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 44945482 - 44945758
Alignment:
| Q |
9 |
acatcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaac |
108 |
Q |
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| T |
44945482 |
acatcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaac |
44945581 |
T |
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| Q |
109 |
aagtaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaa |
208 |
Q |
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| T |
44945582 |
aagcaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaggagtaactagcgcgattcaa |
44945681 |
T |
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| Q |
209 |
tgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaat |
285 |
Q |
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| T |
44945682 |
tgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaat |
44945758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 44943830 - 44944104
Alignment:
| Q |
11 |
atcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaa |
110 |
Q |
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| T |
44943830 |
atcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaa |
44943929 |
T |
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| Q |
111 |
gtaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatg |
210 |
Q |
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| T |
44943930 |
gcaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaagagtgactagcacgattcaatg |
44944029 |
T |
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| Q |
211 |
tcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||| ||||||||||||| |
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| T |
44944030 |
tcttagcaatatattccatatatgcctttttatctcggagtgtaggtgcggtgattaaaaaactgacatgacaat |
44944104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 44940692 - 44940794
Alignment:
| Q |
42 |
tgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatccata |
141 |
Q |
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| T |
44940692 |
tgaagatcccttgtgatttgagtggttgtatccaagaagtacaaaataaatgatgtgaagcaagaacaaataaacatgggtatgggcccataaatccata |
44940791 |
T |
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| Q |
142 |
gga |
144 |
Q |
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||| |
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| T |
44940792 |
gga |
44940794 |
T |
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