View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17393_low_4 (Length: 253)
Name: NF17393_low_4
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17393_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 3758596 - 3758842
Alignment:
| Q |
14 |
caaaggcatgagatggtgaaacatctgtttcaactagatgactaacgcagttcaaatatgtggttaattacattcagtggatg----------------- |
96 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3758596 |
caaaggcatgagatggtgaaacgtctgtttcaactagatgattaacgcagttcaaatatgtggttaattacattcagtggatggttaatgactataacaa |
3758695 |
T |
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| Q |
97 |
--tttcgtaactcattaaacatgcactaaacaaaagtaactacgattttgaacacttggaaatcatgtatatttgaacacctgaaaatgagttcataatc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3758696 |
ggtttcgtaactcattaaacatgcactaaacaaaagtaactacgattttgaacacttggaaatcatgtatatttgaacacctgaaaatgagttcataatc |
3758795 |
T |
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| Q |
195 |
ttggttaaattgtgttcggaggatggccaatgagttttaacaacttg |
241 |
Q |
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| T |
3758796 |
ttggttaaattgtgttcggaggatggtcaatgagttttaacaacttg |
3758842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 42813468 - 42813504
Alignment:
| Q |
63 |
gttcaaatatgtggttaattacattcagtggatgttt |
99 |
Q |
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| T |
42813468 |
gttcaaatatgtggttaattacatttagtggatgttt |
42813504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 15368130 - 15368090
Alignment:
| Q |
56 |
taacgcagttcaaatatgtggttaattacattcagtggatg |
96 |
Q |
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| T |
15368130 |
taacgctgttgaaatatgtggttaattacattcagtggatg |
15368090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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