View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17393_low_8 (Length: 202)
Name: NF17393_low_8
Description: NF17393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17393_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 42916862 - 42916686
Alignment:
| Q |
16 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42916862 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
42916763 |
T |
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| Q |
116 |
atcggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
192 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42916762 |
ataggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
42916686 |
T |
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Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 23253746 - 23253570
Alignment:
| Q |
16 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23253746 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
23253647 |
T |
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| Q |
116 |
atcggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
192 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23253646 |
ataggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
23253570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 4754401 - 4754225
Alignment:
| Q |
16 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4754401 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
4754302 |
T |
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| Q |
116 |
atcggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
192 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4754301 |
ataggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
4754225 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 53534061 - 53534237
Alignment:
| Q |
16 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53534061 |
tcattgtcattgtcttcttctatatgtaggatgaaataaacattatataagacgttttcatagattaattattagaaagaaaagaaaacaaattaaataa |
53534160 |
T |
|
| Q |
116 |
atcggataaattatacccgtagattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
192 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53534161 |
ataggataaattatacccgtacattctaatccaatatcttcatgtagtacattgctattttctgcataattttcttc |
53534237 |
T |
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