View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_high_1 (Length: 822)
Name: NF17394_high_1
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 356 - 713
Target Start/End: Complemental strand, 17153103 - 17152747
Alignment:
| Q |
356 |
cagaagcttgtacataccaagtcattgtttatatgcagatgatattctaatattttgcagtggtaccgttgataatatccggaacatcatgcatcttttt |
455 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17153103 |
cagaagcttgtacataccaagtcattgtttatatgcagatgatattctaatattttgcagtggtac-gttgataatatccggaacatcatgcatcttttt |
17153005 |
T |
|
| Q |
456 |
gaaacttatggtcaatattctagtcaaattgtcaatactcagaagagtaaattctactctgccactatctctttatctagaattcataccatttcttcta |
555 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17153004 |
gaaacttatggtcaatattctggtcaaattgtcaatactcagaagagtaaattctactctgccactatctctttatctagaattcataccatttcttcta |
17152905 |
T |
|
| Q |
556 |
tcactgggttcagtcatggttctatacctttcacatacttgggcgtacctatttttaagggaaaaccaaaatccattcatttaagacctatagtggacag |
655 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17152904 |
tcactgggttcagtcatggttcaatacctttcacatacttgggcatacctctttttaagggaaaaccaaaatccattcatttaagacctatagtggaaag |
17152805 |
T |
|
| Q |
656 |
aatacagagtaaactccatgcatggaggggaaaactgctcaccatcatgggcagggtt |
713 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17152804 |
aatacagagtaaactccatgcatggaggggcaaactgctcaccatcatgggcagggtt |
17152747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 707 - 810
Target Start/End: Complemental strand, 17150153 - 17150050
Alignment:
| Q |
707 |
cagggttcagttggttaatgcagtaattagcagtatgttaacttactcttttcatgtgtataaatggcctgttagcctgctttctgaagtggctaggatg |
806 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17150153 |
cagggttcagttggttaatgcagcaattagcagtattttaacttactcttttcatgtgtataaatggcctgttagcctgctttctgaagtggctaagatg |
17150054 |
T |
|
| Q |
807 |
atga |
810 |
Q |
| |
|
|||| |
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|
| T |
17150053 |
atga |
17150050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 358805 - 358651
Alignment:
| Q |
30 |
cttcacaagaaatcttatgggggaaatatggctttgcaaattgatatcaggaaggcttttgacactattaattggggttttcgcattcaggtgcttcatt |
129 |
Q |
| |
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||||||||||| |||||||||||| | | || ||| |||||||| | || ||||||||||| ||| |||||||| || | ||| || || ||||||| |
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| T |
358805 |
cttcacaagaagtcttatgggggacacttagccttgaaaattgatgtgagaaaggcttttgatactgttaattggaaattcctcatacatgttcttcatt |
358706 |
T |
|
| Q |
130 |
gttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgc |
184 |
Q |
| |
|
||||||| || |||||| ||||||||||||||| | ||||| ||||| ||||| |
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|
| T |
358705 |
gttttggattcaatcaacttttctgtgattggattctaaacattcttcattctgc |
358651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 113 - 308
Target Start/End: Original strand, 9713366 - 9713561
Alignment:
| Q |
113 |
cattcaggtgcttcattgttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgcaaagctatctgttaatatcaatgggaaa |
212 |
Q |
| |
|
|||||| ||||| || |||||||||||| ||| |||||||||||||||||| | || || | || || || || || ||||| ||||| ||||| || |
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| T |
9713366 |
cattcatgtgctccaatgttttggttttcatccaactttctgtgattggattaatactatattgcattcagctaaactctctgtaaatattaatggcaag |
9713465 |
T |
|
| Q |
213 |
gcggtaggctacttcaactgcaccaggggagtgagacaaggggaccctctctcacctctccttttttgcattgcagaggaggttataagtaggggt |
308 |
Q |
| |
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|| || || | |||||||||||| || ||||||||||| || ||||||||||||||||| ||||||||| |||| ||||| || ||||||||||| |
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|
| T |
9713466 |
gctgttggtttcttcaactgcactagaggagtgagacagggagaccctctctcacctcttcttttttgctttgctgaggaagtgttaagtaggggt |
9713561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 651 - 801
Target Start/End: Original strand, 9713904 - 9714054
Alignment:
| Q |
651 |
gacagaatacagagtaaactccatgcatggaggggaaaactgctcaccatcatgggcagggttcagttggttaatgcagtaattagcagtatgttaactt |
750 |
Q |
| |
|
|||| ||| || |||||| | ||||| ||||| || ||| | ||||| || ||||| ||||| || |||| ||||| || ||||| ||||||||||| | |
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|
| T |
9713904 |
gacaaaattcaaagtaaatttcatgcttggagaggtaaattactcactataatgggtagggtgcaactggtaaatgctgtgattagtagtatgttaacgt |
9714003 |
T |
|
| Q |
751 |
actcttttcatgtgtataaatggcctgttagcctgctttctgaagtggcta |
801 |
Q |
| |
|
||||||| ||| | || |||||||||| || | |||||||||||||||||| |
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|
| T |
9714004 |
actctttccatatttacaaatggcctgctaacttgctttctgaagtggcta |
9714054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 24612844 - 24612998
Alignment:
| Q |
30 |
cttcacaagaaatcttatgggggaaatatggctttgcaaattgatatcaggaaggcttttgacactattaattggggttttcgcattcaggtgcttcatt |
129 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||| |||||||| | || ||||||||||| | | |||||||| || | ||| || || ||||||| |
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|
| T |
24612844 |
cttcacaagaagtcttatgggggaaacttagccttgaaaattgatgtgagaaaggcttttgatattgttaattggaaattcctcatacatgttcttcatt |
24612943 |
T |
|
| Q |
130 |
gttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgc |
184 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| | ||||| ||||| ||||| |
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|
| T |
24612944 |
gttttggattcaatcagcttttctgtgattggattctaaacattcttcattctgc |
24612998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 25809718 - 25809851
Alignment:
| Q |
132 |
tttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgcaaagctatctgttaatatcaatgggaaagcggtaggctacttcaact |
231 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| | ||||||||||| |||| || ||| || |||||||||||||| || |||| ||| || | |
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|
| T |
25809718 |
tttggatttaatcagactttctgtgattggatcatgactatccttcaatcaacaaaactttctatttgtatcaatgggaaagttgtgggcttctttaatt |
25809817 |
T |
|
| Q |
232 |
gcaccaggggagtgagacaaggggaccctctctc |
265 |
Q |
| |
|
|||| ||||| |||||||| || ||||||||||| |
|
|
| T |
25809818 |
gcacaaggggggtgagacagggtgaccctctctc |
25809851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 843012 - 842858
Alignment:
| Q |
30 |
cttcacaagaaatcttatgggggaaatatggctttgcaaattgatatcaggaaggcttttgacactattaattggggttttcgcattcaggtgcttcatt |
129 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||| |||||||| | || ||||||||||| ||| |||||||| || | ||| || || ||||||| |
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|
| T |
843012 |
cttcacaagaagtcttatgggggaaacttagccttgaaaattgatgtgagaaaggcttttgatactgttaattggaaattcctcatacatgttcttcatt |
842913 |
T |
|
| Q |
130 |
gttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgc |
184 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| | ||||| ||||| ||||| |
|
|
| T |
842912 |
gttttggattcaatcagcttttctgtgattggattctaaacattcttcattctgc |
842858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 4906957 - 4906803
Alignment:
| Q |
30 |
cttcacaagaaatcttatgggggaaatatggctttgcaaattgatatcaggaaggcttttgacactattaattggggttttcgcattcaggtgcttcatt |
129 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||| |||||| | | || ||||||||||| |||||||||||| || | ||| || || ||||||| |
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|
| T |
4906957 |
cttcacaagaagtcttatgggggaaacttagccttggaaattgttgtgagaaaggcttttgatactattaattggaaattcctcatacatgttcttcatt |
4906858 |
T |
|
| Q |
130 |
gttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgc |
184 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| | ||||| ||||| ||||| |
|
|
| T |
4906857 |
gttttggattcaatcagcttttctgtgattggattctaaacattcttcattctgc |
4906803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 4932826 - 4932672
Alignment:
| Q |
30 |
cttcacaagaaatcttatgggggaaatatggctttgcaaattgatatcaggaaggcttttgacactattaattggggttttcgcattcaggtgcttcatt |
129 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||| |||||| | | || ||||||||||| |||||||||||| || | ||| || || ||||||| |
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|
| T |
4932826 |
cttcacaagaagtcttatgggggaaacttagccttggaaattgttgtgagaaaggcttttgatactattaattggaaattcctcatacatgttcttcatt |
4932727 |
T |
|
| Q |
130 |
gttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgc |
184 |
Q |
| |
|
||||||| || |||||| ||||| ||||||||| | ||||| ||||| ||||| |
|
|
| T |
4932726 |
gttttggattcaatcaacttttctatgattggattctaaacattcttcattctgc |
4932672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 29756838 - 29756992
Alignment:
| Q |
30 |
cttcacaagaaatcttatgggggaaatatggctttgcaaattgatatcaggaaggcttttgacactattaattggggttttcgcattcaggtgcttcatt |
129 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||| |||||||| | || ||||||||||| ||| |||||||| || | ||| || || ||||||| |
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|
| T |
29756838 |
cttcacaagaagtcttatgggggaaacttagccttgaaaattgatgtgagaaaggcttttgatactgttaattggaaattcctcatacatgttcttcatt |
29756937 |
T |
|
| Q |
130 |
gttttggttttaatcaaactttctgtgattggatcattaacatccttcaatctgc |
184 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| | ||||| ||||| ||||| |
|
|
| T |
29756938 |
gttttggattcaatcagcttttctgtgattggattctaaacattcttcattctgc |
29756992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 32230853 - 32230808
Alignment:
| Q |
241 |
gagtgagacaaggggaccctctctcacctctccttttttgcattgc |
286 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
32230853 |
gagtgaggcaaggtgaccctctgtcacctctccttttttgcattgc |
32230808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 18400547 - 18400584
Alignment:
| Q |
67 |
aaattgatatcaggaaggcttttgacactattaattgg |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
18400547 |
aaattgacatcaggaaggcttttggcactattaattgg |
18400584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 18406602 - 18406639
Alignment:
| Q |
67 |
aaattgatatcaggaaggcttttgacactattaattgg |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
18406602 |
aaattgacatcaggaaggcttttggcactattaattgg |
18406639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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