View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_high_13 (Length: 285)

Name: NF17394_high_13
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_high_13
NF17394_high_13
[»] chr2 (6 HSPs)
chr2 (18-285)||(41650130-41650397)
chr2 (25-285)||(43227769-43228029)
chr2 (108-285)||(43224056-43224228)
chr2 (139-285)||(41654670-41654816)
chr2 (139-285)||(43213347-43213493)
chr2 (140-285)||(43206374-43206519)
[»] chr8 (2 HSPs)
chr8 (151-243)||(5073627-5073719)
chr8 (39-75)||(13267906-13267942)
[»] scaffold0633 (1 HSPs)
scaffold0633 (39-75)||(8943-8979)
[»] chr1 (1 HSPs)
chr1 (39-75)||(41666250-41666286)
[»] chr4 (2 HSPs)
chr4 (39-78)||(43365909-43365948)
chr4 (41-71)||(49888328-49888358)
[»] chr3 (2 HSPs)
chr3 (16-71)||(25189514-25189569)
chr3 (42-71)||(39450803-39450832)
[»] chr7 (1 HSPs)
chr7 (16-68)||(37327454-37327506)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 41650397 - 41650130
Alignment:
Q  18 atgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaac 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41650397 atgaacgtcaataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaacccataattggaaaccaaaac 41650298  T
Q  118 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650297 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 41650198  T
Q  218 cctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650197 cctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact 41650130  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 285
Target Start/End: Original strand, 43227769 - 43228029
Alignment:
Q  25 tcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaacactca-g 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||| |||| || || |||| |||||||||| |    
T  43227769 tcgataaaattgttagaaaattctcttgaaaacttcatttaaaacatgtgatatagaaaaccaagataaaa-tccacaactgaaaactaaaacactcaag 43227867  T
Q  124 gaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtc 223  Q
    |||||||   |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  43227868 gaaaaaaaaaatgcagacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgta 43227967  T
Q  224 actgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact 285  Q
    ||||||||||||||||||||| | ||||| || |||||||||||||||| ||||||||||||    
T  43227968 actgcaactggatgtttatattgaacacccaactcatccaattttgttcttataagcttact 43228029  T

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Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 108 - 285
Target Start/End: Original strand, 43224056 - 43224228
Alignment:
Q  108 aaaccaaaacactcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgta 207  Q
    |||||||||||||||| |||||||||||||    ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  43224056 aaaccaaaacactcag-aaaaaatgtagac----ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgta 43224150  T
Q  208 accaataacacctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact 285  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||    
T  43224151 accaataacacctgtcactgcaactggatgtttatattgaacacctaattcatccaattctgttcttataagcttact 43224228  T

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Target: chr2; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 41654816 - 41654670
Alignment:
Q  139 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 238  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41654816 tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 41654717  T
Q  239 ttatatgggacacctaattcatccaattttgttcgtataagcttact 285  Q
    |||||||  ||||| ||||||||||||||||||| ||||||||||||    
T  41654716 ttatatgtaacacccaattcatccaattttgttcttataagcttact 41654670  T

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Target: chr2; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 43213347 - 43213493
Alignment:
Q  139 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 238  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43213347 tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt 43213446  T
Q  239 ttatatgggacacctaattcatccaattttgttcgtataagcttact 285  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  43213447 ttatatgggacacctaattcatctaattttgttcttataagcttact 43213493  T

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Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 140 - 285
Target Start/End: Original strand, 43206374 - 43206519
Alignment:
Q  140 acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 239  Q
    ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43206374 acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 43206473  T
Q  240 tatatgggacacctaattcatccaattttgttcgtataagcttact 285  Q
    ||||| | ||||| || |||||||||||||||| ||||||||||||    
T  43206474 tatattgaacacccaactcatccaattttgttcttataagcttact 43206519  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
Q  151 aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttata 243  Q
    ||||||||||||||||||||| | ||| ||||||||||  |  |||||||||||| ||||||| ||||| || | ||||||||||| ||||||    
T  5073627 aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata 5073719  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 13267942 - 13267906
Alignment:
Q  39 agaaaattctcttgaaaacttcatttaaaacatgtta 75  Q
    |||||||||  ||||||||||||||||||||||||||    
T  13267942 agaaaattcctttgaaaacttcatttaaaacatgtta 13267906  T

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Target: scaffold0633 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 8979 - 8943
Alignment:
Q  39 agaaaattctcttgaaaacttcatttaaaacatgtta 75  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8979 agaaaattttcttgaaaacttcatttaaaacatgtta 8943  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 41666250 - 41666286
Alignment:
Q  39 agaaaattctcttgaaaacttcatttaaaacatgtta 75  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41666250 agaaaattttcttgaaaacttcatttaaaacatgtta 41666286  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 43365948 - 43365909
Alignment:
Q  39 agaaaattctcttgaaaacttcatttaaaacatgttacat 78  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  43365948 agaaaattcccttaaaaacttcatttaaaacatgttacat 43365909  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 49888328 - 49888358
Alignment:
Q  41 aaaattctcttgaaaacttcatttaaaacat 71  Q
    |||||||||||||||||||||||||||||||    
T  49888328 aaaattctcttgaaaacttcatttaaaacat 49888358  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 25189569 - 25189514
Alignment:
Q  16 agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacat 71  Q
    |||||||| | |||||| |||| |  ||||||||||||||||||||||||||||||    
T  25189569 agatgaacattgataaaattgtaacgaaattctcttgaaaacttcatttaaaacat 25189514  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 39450803 - 39450832
Alignment:
Q  42 aaattctcttgaaaacttcatttaaaacat 71  Q
    ||||||||||||||||||||||||||||||    
T  39450803 aaattctcttgaaaacttcatttaaaacat 39450832  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 37327454 - 37327506
Alignment:
Q  16 agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaa 68  Q
    |||| ||| |||||||| |||  | ||||||||||||||||||||||||||||    
T  37327454 agattaacatcgataaaattgcaacaaaattctcttgaaaacttcatttaaaa 37327506  T

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