View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_high_14 (Length: 273)

Name: NF17394_high_14
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_high_14
NF17394_high_14
[»] chr6 (8 HSPs)
chr6 (16-248)||(16872412-16872644)
chr6 (128-272)||(16570495-16570639)
chr6 (154-273)||(16579102-16579221)
chr6 (154-273)||(16616159-16616278)
chr6 (169-272)||(17040614-17040717)
chr6 (33-125)||(16653577-16653669)
chr6 (51-105)||(16570245-16570299)
chr6 (126-158)||(16653497-16653529)
[»] chr2 (2 HSPs)
chr2 (167-272)||(32790585-32790690)
chr2 (184-225)||(237191-237232)
[»] chr1 (1 HSPs)
chr1 (184-225)||(7388573-7388614)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 16872412 - 16872644
Alignment:
Q  16 ccttcatgtttctatggctcaattctagaataatcctcttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttcatttaggatt 115  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16872412 ccttcatgtttctattgctcaattctagcataatcctcttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttcatctaggatt 16872511  T
Q  116 cgaagaatagttcatccatttcttctatctaattgaagaatgtcatgcataataatgactagggaaggttgcaagagagctttgacaagatcaacaaaca 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872512 cgaagaatagttcatccatttcttcgatctaattgaagaatgtcatgcataataatgactagggaaggttgcaagagagctttgacaagatcaacaaaca 16872611  T
Q  216 gcttgagaaattcaggcgtgtttccaaaaagat 248  Q
    |||||||| |||||||||||||||| |||||||    
T  16872612 gcttgagagattcaggcgtgtttccgaaaagat 16872644  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 272
Target Start/End: Original strand, 16570495 - 16570639
Alignment:
Q  128 catccatttcttctatctaattgaagaatgtcatgcataataatgactagggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaatt 227  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  16570495 catccatttcttctatctaattgaagaatgccatggataataatgactggggaaggttgcaagagagcattaacaagatcaacaaacagcttgagaaatt 16570594  T
Q  228 caggcgtgtttccaaaaagatccataaactttatatcaggactct 272  Q
    |||| |||||||  ||||| ||| |||||||||||||||||||||    
T  16570595 caggtgtgtttctgaaaaggtccctaaactttatatcaggactct 16570639  T

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Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 16579102 - 16579221
Alignment:
Q  154 aatgtcatgcataataatgactagggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaattcaggcgtgtttccaaaaagatccata 253  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||    
T  16579102 aatgtcatggataataatgactggggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaaatcaggcgtgtttccgaaaagatcccta 16579201  T
Q  254 aactttatatcaggactctc 273  Q
    ||||||||||||||||||||    
T  16579202 aactttatatcaggactctc 16579221  T

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Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 16616278 - 16616159
Alignment:
Q  154 aatgtcatgcataataatgactagggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaattcaggcgtgtttccaaaaagatccata 253  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||    
T  16616278 aatgtcatggataataatgactggggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaaatcaggcgtgtttccgaaaagatcccta 16616179  T
Q  254 aactttatatcaggactctc 273  Q
    ||||||||||||||||||||    
T  16616178 aactttatatcaggactctc 16616159  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 17040717 - 17040614
Alignment:
Q  169 aatgactagggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaattcaggcgtgtttccaaaaagatccataaactttatatcagga 268  Q
    ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||  || ||||||||| | |||||    
T  17040717 aatgacttggaaaggttgcaagagagctttgacaatatcaacaaacagcttgagaaattcatgcgtctttccgaaaaggcccctaaactttacaacagga 17040618  T
Q  269 ctct 272  Q
    ||||    
T  17040617 ctct 17040614  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 16653669 - 16653577
Alignment:
Q  33 ctcaattctagaataatcctcttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttcatttaggattcgaagaatag 125  Q
    ||||||||| ||| |||||||||| || ||| |||||||||||||||||||||||||| ||||  |||||||| |  ||||||||||| ||||    
T  16653669 ctcaattcttgaagaatcctcttcggtttccgttgcttgttcccataatctcagtgtcctctacgtacatttcctcgaggattcgaagcatag 16653577  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 16570245 - 16570299
Alignment:
Q  51 ctcttctgtgtccattgcttgttcccataatctcagtgtcttctatctacatttc 105  Q
    ||||||||| || |||||||||| ||||||||||||| || |||||||| |||||    
T  16570245 ctcttctgtttcaattgcttgtttccataatctcagtttcctctatctagatttc 16570299  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 16653529 - 16653497
Alignment:
Q  126 ttcatccatttcttctatctaattgaagaatgt 158  Q
    |||||||||||||||||||||||| ||||||||    
T  16653529 ttcatccatttcttctatctaattaaagaatgt 16653497  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 32790585 - 32790690
Alignment:
Q  167 ataatgactagggaaggttgcaagagagctttgacaagatcaacaaacagcttgagaaattcaggcgtgtttccaaaaagatccataaactttatatcag 266  Q
    ||||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||||||| | ||| ||||  |||| ||| ||||||||| || ||    
T  32790585 ataatgactggggaaggttgcaagagaggtttgacaatgtcaacaaacagcttgagaaattcatgtgtggttccgtaaaggtccctaaactttacataag 32790684  T
Q  267 gactct 272  Q
    ||||||    
T  32790685 gactct 32790690  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 237232 - 237191
Alignment:
Q  184 ttgcaagagagctttgacaagatcaacaaacagcttgagaaa 225  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  237232 ttgcaagagagctttgacaagatcaacaaacagctcgagaaa 237191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 7388573 - 7388614
Alignment:
Q  184 ttgcaagagagctttgacaagatcaacaaacagcttgagaaa 225  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  7388573 ttgcaagagagctttgacaagatcaacaaacagctcgagaaa 7388614  T

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