View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_high_15 (Length: 272)
Name: NF17394_high_15
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 41650122 - 41649963
Alignment:
| Q |
2 |
aattcttgataactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttg |
101 |
Q |
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| T |
41650122 |
aattcttgataactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttg |
41650023 |
T |
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| Q |
102 |
ggattgataagtggtcatttgaagtggtggaggaagaatctgagaagattggtgttgcag |
161 |
Q |
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| T |
41650022 |
ggattgataagtggtcatttgaagtggtggaggaggaatctgagaagattggtgttgcag |
41649963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 43228037 - 43228199
Alignment:
| Q |
2 |
aattcttgataactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttg |
101 |
Q |
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| T |
43228037 |
aattcttgataactcagttcaggattctcatgaatttttctccttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttg |
43228136 |
T |
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| Q |
102 |
ggattgataagtggtcatttgaagtggt---ggaggaagaatctgagaagattggtgttgcag |
161 |
Q |
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| T |
43228137 |
ggattgataagtggtcatttgaagtggtggaggaggaggaatctgagaagattgatgttgcag |
43228199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 43206527 - 43206683
Alignment:
| Q |
2 |
aattcttgataactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttg |
101 |
Q |
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| T |
43206527 |
aattcttgataactcagttcaggattctcatgaatttttctccttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttg |
43206626 |
T |
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| Q |
102 |
ggattgataagtggtcatttgaagtggtggaggaagaatctgagaagattggtgttgcag |
161 |
Q |
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| T |
43206627 |
ggattgataagtggtcatttgaagtggaaga-gaag--tctgagaagactggtgttgcag |
43206683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 43213501 - 43213659
Alignment:
| Q |
2 |
aattcttgataactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttg |
101 |
Q |
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||||||| ||||| | |||||||||||||||||| || ||||||||||||||||| |||||||||||||||| || |||| ||| | |||| |||| |
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| T |
43213501 |
aattcttcataaccaacttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggctctttggctaattccagaagctttg |
43213600 |
T |
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| Q |
102 |
ggattgataagtggtcatttgaagtggtggaggaagaatctgagaagattggtgttgca |
160 |
Q |
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| T |
43213601 |
gaattgctaagtggtcttttgaattagtggaggaggaatctgagaaaataggtgttgca |
43213659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 41654662 - 41654581
Alignment:
| Q |
2 |
aattcttgataactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttgg |
83 |
Q |
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||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41654662 |
aattcttcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttgg |
41654581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 43224251 - 43224317
Alignment:
| Q |
17 |
agttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttgg |
83 |
Q |
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| T |
43224251 |
agttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttgg |
43224317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 41649898 - 41649869
Alignment:
| Q |
226 |
catgcattcaaagtgttaaggtgggaaatg |
255 |
Q |
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| T |
41649898 |
catgcattcaaagtgttaaggtgggaaatg |
41649869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 43224351 - 43224383
Alignment:
| Q |
129 |
tggaggaagaatctgagaagattggtgttgcag |
161 |
Q |
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| T |
43224351 |
tggaggaagaatctgagaagattggtgtagcag |
43224383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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