View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_high_19 (Length: 251)

Name: NF17394_high_19

Description: NF17394

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17394_high_19

[»] chr3 (4 HSPs)

[»] scaffold0836 (1 HSPs)

Alignment Details

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 227; E-Value: 1e-125

Query Start/End: Original strand, 10 - 251

Target Start/End: Original strand, 18029155 - 18029399

Alignment:

Q	10	attattctgcttaataatattgttttttctcatactaacaaatatctctacatcaataccaatattcttcccgtaagattaatagtttcagaaacattaa	109	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029155	attactctgcttaataatattgttttttctcatactaacaaatatctctacatcaataccaatattcttcccgtaagattaatagtttcagaaacattaa	18029254	T

Q	110	taaaaatatatagaaag---ggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaag	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029255	taaaaatatatagaaagaaaggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaag	18029354	T

Q	207	gtggaaacgtcgtgcgatagtttttggtacacatgccagttaaac	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029355	gtggaaacgtcgtgcgatagtttttggtacacatgccagttaaac	18029399	T

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Target: chr3; HSP #2

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 83 - 212

Target Start/End: Original strand, 27395996 - 27396128

Alignment:

Q	83	taagattaatagtttcagaaacattaataaaaatatatagaaag---ggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgc	179	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\|\|
T	27395996	taagattactagtttcacaaacattaatgaaaatatatggaaagatgggtgggtaccttgacaatcaaatcaccaatatatttaagaacaagctggctgc	27396095	T

Q	180	aattaatgagttcaagtaccgccaaaggtggaa	212	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|
T	27396096	aattgatgagttcaagttccaccaaagctggaa	27396128	T

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Target: chr3; HSP #3

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 87 - 125

Target Start/End: Original strand, 18079648 - 18079686

Alignment:

Q	87	attaatagtttcagaaacattaataaaaatatatagaaa	125	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18079648	attaataatttcacaaacattaataaaaatatatagaaa	18079686	T

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Target: chr3; HSP #4

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 145 - 243

Target Start/End: Original strand, 18079745 - 18079843

Alignment:

Q	145	gaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaaggtggaaacgtcgtgcgatagtttttggtacacatgcc	243	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18079745	gaaattaccaataggtttaatatcaaccacgaagcaatcatcgagtttaagtaccgccgaaggtggaaatgttgtgcgataacgtttggtacacatgcc	18079843	T

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Target: scaffold0836 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: scaffold0836

Description:

Target: scaffold0836; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 202 - 242

Target Start/End: Original strand, 937 - 977

Alignment:

Q	202	caaaggtggaaacgtcgtgcgatagtttttggtacacatgc	242	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	937	caaaggtggcaacgttgtgcgatagtgtttggtacacatgc	977	T

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