View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_high_3 (Length: 743)
Name: NF17394_high_3
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 18 - 729
Target Start/End: Original strand, 48064433 - 48065144
Alignment:
| Q |
18 |
acttccgatatttacgaaaggaaaggagaggattcatacccgttattgtcaatatcaaacattttaaaagccactgaaaagctggattctggtatgctga |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48064433 |
acttccgacatttacgaaaggaaaggagaggattcatacccgttattgtcaatatcaaacattttaaaagccactgaaaagctggattctggtatgctga |
48064532 |
T |
|
| Q |
118 |
gaagagtgacaaaaaatatgtacctggtatccaaaaacaagatattttgttatcaaaactacatagcacttgaactctgaaatgatgttgttcatatttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48064533 |
gaagagtgacaaaaaatatgtacctggtatccaaaaacaagatattttgttatcaaaactacatagcacttgaactctgaaatgatgttgttcatatttc |
48064632 |
T |
|
| Q |
218 |
tcatgacaaaagagttttaagcaaataaaagagacggaaaatactcactccgcaaaagaaatgagtccatcattatctgtgtcaaagagcataaaaaatt |
317 |
Q |
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| T |
48064633 |
tcatgacaaaagagtttcaagcaaataaaagagacggaaaatactcactccgcaaaagaaatgagtccatcattatctgtgtcaaagagcataaaaaatt |
48064732 |
T |
|
| Q |
318 |
cagaaggatcgcattctaacgagccaggaaactgttctcctcttaaagaaccttctctaacacgtcttgattcggaaggaggaaatacaggaacaatggc |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48064733 |
cagaaggatcgcattctaacgagccgggaaactgttctcctcttaaagaaccttctctaacacgtcttgattcggaaggaggaaatacaggaacaatggc |
48064832 |
T |
|
| Q |
418 |
acgcatcaaatctgcaggtgtcataaaaacctcgccaccagggatccgattcgatgcaaagtactcaaaaacctagaatcaaacaaggtgtcatattaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48064833 |
acgcatcaaatctgcaggtgtcataaaaacctcgccaccagggatccgattcgatgcaaagtactcaaaaacctagaatcaaacaaggtgtcatattaaa |
48064932 |
T |
|
| Q |
518 |
acattcaatggtaacaatttgctggttttaagctattgattgatcattaaacaaactcataatgacaagattgattaccttttctggaggactttgcaag |
617 |
Q |
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| T |
48064933 |
acattcaatggtaacaatttgctggttttaagctattgattgatcattaaacaaactcataatgacaagattgattaccttttctggaggactttgcaag |
48065032 |
T |
|
| Q |
618 |
cgaagacgtttttcgtagttgaagaatactcttcttcgataattatctgcaccataacagaaacacaaataaattaacaattaaactgcaacaattcatg |
717 |
Q |
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| T |
48065033 |
cgaagacgtttttcgtagttgaagaatactcttcttcgataattatctgcaccataacagaaacacaaataaattaacaattaaactgcaacaattcatg |
48065132 |
T |
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| Q |
718 |
gttcgatctctg |
729 |
Q |
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|||||||||||| |
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| T |
48065133 |
gttcgatctctg |
48065144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 2680910 - 2680998
Alignment:
| Q |
55 |
acccgttattgtcaatatcaaacattttaaaagccactgaaaagctggattctggtatgctgagaagagtgacaaaaaatatgtacctg |
143 |
Q |
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|||| |||||||| | |||||||||||||| ||||| |||||||| |||||||| ||||||||||| || |||||||| || |||||| |
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| T |
2680910 |
acccattattgtccacgtcaaacattttaaatgccacagaaaagcttgattctgggatgctgagaagtgttacaaaaaagatatacctg |
2680998 |
T |
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