View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_12 (Length: 287)

Name: NF17394_low_12
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_low_12
NF17394_low_12
[»] chr1 (26 HSPs)
chr1 (177-287)||(44094698-44094808)
chr1 (173-287)||(40214984-40215098)
chr1 (180-287)||(3559620-3559727)
chr1 (177-284)||(41876400-41876507)
chr1 (181-287)||(16045753-16045859)
chr1 (177-287)||(18404442-18404552)
chr1 (177-287)||(25463676-25463786)
chr1 (175-284)||(37821792-37821901)
chr1 (176-284)||(9910251-9910359)
chr1 (176-284)||(36966666-36966774)
chr1 (177-284)||(19015404-19015511)
chr1 (177-287)||(25973414-25973523)
chr1 (176-284)||(6883486-6883594)
chr1 (176-287)||(32000222-32000333)
chr1 (171-287)||(44690984-44691100)
chr1 (177-287)||(27523210-27523322)
chr1 (177-287)||(40273702-40273812)
chr1 (220-284)||(51737548-51737612)
chr1 (220-287)||(33786590-33786657)
chr1 (177-287)||(34519758-34519868)
chr1 (250-287)||(20305086-20305123)
chr1 (220-253)||(44690859-44690892)
chr1 (220-254)||(32000103-32000137)
chr1 (220-254)||(33786468-33786502)
chr1 (220-254)||(40273902-40273936)
chr1 (220-254)||(52329469-52329503)
[»] chr7 (21 HSPs)
chr7 (176-287)||(4974690-4974801)
chr7 (176-287)||(34482834-34482945)
chr7 (177-287)||(42611811-42611921)
chr7 (177-287)||(45637712-45637822)
chr7 (175-284)||(48880885-48880994)
chr7 (175-287)||(3961977-3962089)
chr7 (177-285)||(15329273-15329381)
chr7 (177-287)||(15577805-15577915)
chr7 (171-284)||(35444552-35444665)
chr7 (176-287)||(20010053-20010163)
chr7 (171-285)||(15238376-15238490)
chr7 (177-285)||(42696083-42696191)
chr7 (176-287)||(24394971-24395082)
chr7 (177-284)||(25167808-25167915)
chr7 (177-287)||(37477035-37477145)
chr7 (220-284)||(30848612-30848676)
chr7 (175-287)||(36790421-36790533)
chr7 (177-287)||(18036978-18037088)
chr7 (220-287)||(40880747-40880814)
chr7 (181-287)||(29737143-29737249)
chr7 (220-254)||(4974572-4974606)
[»] chr5 (20 HSPs)
chr5 (176-287)||(11361086-11361197)
chr5 (171-284)||(38899684-38899797)
chr5 (177-285)||(2477636-2477744)
chr5 (177-284)||(3362778-3362885)
chr5 (177-284)||(4892202-4892309)
chr5 (177-284)||(25398238-25398345)
chr5 (174-284)||(12850798-12850908)
chr5 (176-284)||(33584287-33584395)
chr5 (176-287)||(22913009-22913120)
chr5 (177-287)||(12614688-12614798)
chr5 (177-287)||(14138668-14138778)
chr5 (177-280)||(6043473-6043576)
chr5 (181-287)||(8145379-8145485)
chr5 (171-285)||(17545642-17545756)
chr5 (176-284)||(4433965-4434073)
chr5 (177-287)||(37321748-37321859)
chr5 (176-284)||(3521964-3522072)
chr5 (220-287)||(31640895-31640962)
chr5 (220-254)||(22912894-22912928)
chr5 (181-254)||(12614536-12614609)
[»] scaffold0096 (1 HSPs)
scaffold0096 (177-287)||(41011-41121)
[»] chr6 (20 HSPs)
chr6 (177-287)||(33695282-33695392)
chr6 (177-287)||(33696696-33696806)
chr6 (176-287)||(17175976-17176087)
chr6 (177-287)||(18365528-18365638)
chr6 (177-287)||(18370792-18370902)
chr6 (175-287)||(17705420-17705532)
chr6 (177-284)||(23291042-23291149)
chr6 (177-287)||(2309378-2309488)
chr6 (177-287)||(6127275-6127386)
chr6 (177-286)||(28675148-28675257)
chr6 (183-287)||(11548543-11548647)
chr6 (177-284)||(6031699-6031806)
chr6 (177-284)||(25986930-25987037)
chr6 (177-287)||(9752200-9752309)
chr6 (220-280)||(32702248-32702308)
chr6 (180-287)||(8515681-8515787)
chr6 (177-256)||(18889683-18889761)
chr6 (181-254)||(29693639-29693712)
chr6 (220-254)||(2309260-2309294)
chr6 (220-254)||(11548426-11548460)
[»] chr4 (30 HSPs)
chr4 (177-287)||(10442744-10442854)
chr4 (178-287)||(7745067-7745176)
chr4 (176-284)||(49387846-49387954)
chr4 (177-284)||(31078777-31078884)
chr4 (177-284)||(44893426-44893533)
chr4 (177-287)||(21802277-21802387)
chr4 (176-284)||(2624836-2624944)
chr4 (177-285)||(23964422-23964530)
chr4 (177-284)||(4751446-4751553)
chr4 (177-284)||(36072947-36073054)
chr4 (177-284)||(47290066-47290173)
chr4 (177-287)||(33530643-33530753)
chr4 (177-284)||(53123030-53123138)
chr4 (176-287)||(22199260-22199371)
chr4 (177-284)||(24128239-24128346)
chr4 (177-284)||(37934899-37935006)
chr4 (220-287)||(17655473-17655540)
chr4 (177-284)||(44893171-44893279)
chr4 (176-284)||(46441843-46441951)
chr4 (220-284)||(9088913-9088977)
chr4 (183-284)||(42671675-42671776)
chr4 (177-285)||(24392667-24392775)
chr4 (181-284)||(36073354-36073457)
chr4 (177-284)||(50156536-50156643)
chr4 (221-287)||(11314189-11314255)
chr4 (223-285)||(37219671-37219733)
chr4 (223-285)||(44744481-44744543)
chr4 (223-283)||(30563255-30563315)
chr4 (220-287)||(36073698-36073765)
chr4 (220-254)||(37219825-37219859)
[»] chr3 (33 HSPs)
chr3 (171-287)||(6041878-6041994)
chr3 (177-284)||(2754717-2754824)
chr3 (177-287)||(11347268-11347378)
chr3 (177-287)||(33113793-33113903)
chr3 (176-287)||(33145712-33145822)
chr3 (171-284)||(37217011-37217124)
chr3 (176-284)||(3456063-3456171)
chr3 (177-284)||(3137372-3137479)
chr3 (177-287)||(3574481-3574592)
chr3 (176-287)||(48160904-48161015)
chr3 (171-287)||(42297347-42297464)
chr3 (176-284)||(30385010-30385118)
chr3 (177-284)||(34482868-34482975)
chr3 (177-287)||(22426299-22426409)
chr3 (220-287)||(3089460-3089527)
chr3 (176-287)||(8362000-8362111)
chr3 (177-287)||(8320539-8320649)
chr3 (177-287)||(36864982-36865092)
chr3 (178-287)||(9796984-9797093)
chr3 (177-287)||(19650854-19650965)
chr3 (177-284)||(37522053-37522160)
chr3 (233-287)||(42297920-42297974)
chr3 (177-287)||(33839531-33839641)
chr3 (220-285)||(41883180-41883245)
chr3 (177-287)||(24343547-24343657)
chr3 (189-287)||(47738117-47738215)
chr3 (188-287)||(42921154-42921253)
chr3 (62-99)||(30936502-30936539)
chr3 (177-282)||(26612785-26612890)
chr3 (181-254)||(36864831-36864904)
chr3 (177-286)||(41224233-41224342)
chr3 (249-287)||(40327897-40327935)
chr3 (234-286)||(46918959-46919011)
[»] chr8 (37 HSPs)
chr8 (177-284)||(32064745-32064852)
chr8 (177-287)||(20091756-20091866)
chr8 (177-287)||(34665382-34665492)
chr8 (181-287)||(37986010-37986116)
chr8 (178-287)||(14128865-14128974)
chr8 (176-284)||(35353040-35353148)
chr8 (177-284)||(17841808-17841915)
chr8 (176-287)||(32393857-32393968)
chr8 (177-284)||(40780087-40780194)
chr8 (177-287)||(31347737-31347847)
chr8 (177-287)||(39772756-39772866)
chr8 (177-286)||(1645921-1646030)
chr8 (177-284)||(42755000-42755107)
chr8 (177-287)||(15187560-15187670)
chr8 (177-287)||(41819733-41819843)
chr8 (178-287)||(27782072-27782181)
chr8 (177-284)||(6108191-6108298)
chr8 (177-284)||(24211511-24211618)
chr8 (177-285)||(30835004-30835111)
chr8 (180-282)||(8453837-8453939)
chr8 (220-284)||(3596999-3597063)
chr8 (177-284)||(26042071-26042181)
chr8 (220-284)||(25581197-25581261)
chr8 (177-287)||(7017820-7017930)
chr8 (220-287)||(7022021-7022088)
chr8 (220-287)||(15972832-15972899)
chr8 (181-287)||(24844814-24844919)
chr8 (220-287)||(3890572-3890638)
chr8 (174-249)||(37132651-37132726)
chr8 (224-287)||(10044390-10044453)
chr8 (175-287)||(27835408-27835520)
chr8 (185-253)||(38016979-38017047)
chr8 (220-258)||(3817914-3817952)
chr8 (181-256)||(3890413-3890488)
chr8 (220-254)||(20091638-20091672)
chr8 (220-254)||(34665575-34665609)
chr8 (220-256)||(30055708-30055744)
[»] chr2 (21 HSPs)
chr2 (177-284)||(35160757-35160864)
chr2 (177-287)||(9293531-9293641)
chr2 (178-284)||(10661888-10661994)
chr2 (176-287)||(21936080-21936191)
chr2 (177-284)||(23268020-23268127)
chr2 (177-287)||(14941321-14941431)
chr2 (177-287)||(43330912-43331022)
chr2 (180-287)||(31174789-31174896)
chr2 (177-284)||(33380207-33380314)
chr2 (177-284)||(7475466-7475573)
chr2 (177-287)||(13354846-13354956)
chr2 (179-284)||(21393646-21393751)
chr2 (220-287)||(3989119-3989186)
chr2 (177-286)||(9723405-9723514)
chr2 (177-285)||(27847632-27847740)
chr2 (61-116)||(40810854-40810909)
chr2 (189-287)||(22591494-22591592)
chr2 (234-287)||(16767427-16767480)
chr2 (110-147)||(40810921-40810958)
chr2 (220-287)||(37335756-37335823)
chr2 (220-254)||(34320994-34321028)
[»] scaffold0665 (1 HSPs)
scaffold0665 (178-287)||(3069-3178)
[»] scaffold0178 (1 HSPs)
scaffold0178 (172-284)||(11616-11728)
[»] scaffold0204 (1 HSPs)
scaffold0204 (177-284)||(4396-4503)
[»] scaffold0085 (1 HSPs)
scaffold0085 (177-284)||(47850-47957)
[»] scaffold0471 (1 HSPs)
scaffold0471 (177-284)||(12842-12949)
[»] scaffold0228 (3 HSPs)
scaffold0228 (188-284)||(8413-8509)
scaffold0228 (188-284)||(15995-16091)
scaffold0228 (188-284)||(25947-26043)
[»] scaffold0041 (1 HSPs)
scaffold0041 (220-287)||(85469-85536)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 44094698 - 44094808
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44094698 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 44094797  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  44094798 taatgttagcc 44094808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 40214984 - 40215098
Alignment:
Q  173 aattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctg 272  Q
    ||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  40214984 aattgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttg 40215083  T
Q  273 aaattaatgttagcc 287  Q
    |||||||||||||||    
T  40215084 aaattaatgttagcc 40215098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 3559620 - 3559727
Alignment:
Q  180 caatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaa 279  Q
    |||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||    
T  3559620 caatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaattaa 3559719  T
Q  280 tgttagcc 287  Q
    ||||||||    
T  3559720 tgttagcc 3559727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 41876507 - 41876400
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| ||||||       ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  41876507 gagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacatggcagaataatcacccttaggttttatcaagaaatagtcctgaaat 41876408  T
Q  277 taatgtta 284  Q
    ||||||||    
T  41876407 taatgtta 41876400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 16045859 - 16045753
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    ||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatattcttgaaattaat 16045760  T
Q  281 gttagcc 287  Q
    |||||||    
T  16045759 gttagcc 16045753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 18404442 - 18404552
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  18404442 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggtagaataatcacctttagattttatcaagaaatagtcctgaaat 18404541  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  18404542 taatgttagcc 18404552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 25463676 - 25463786
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||| || |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  25463676 gagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 25463775  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  25463776 taatgttagcc 25463786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 37821901 - 37821792
Alignment:
Q  175 ttgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    ||||||||||||||||||||||||| ||||| |||| |       |||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  37821901 ttgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaa 37821802  T
Q  275 attaatgtta 284  Q
    ||||||||||    
T  37821801 attaatgtta 37821792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 9910359 - 9910251
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9910359 tgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcaaccttagattttatcaagaaatagtcctgaaa 9910260  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  9910259 ttaatgtta 9910251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 36966774 - 36966666
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| |||| |       |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36966774 tgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 36966675  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  36966674 ttaatgtta 36966666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 19015404 - 19015511
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19015404 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 19015503  T
Q  277 taatgtta 284  Q
    ||||||||    
T  19015504 taatgtta 19015511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 25973414 - 25973523
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||||  |       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25973414 gagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgaca-ggcagaataatcacccttagattttatcaagaaataatcctgaaat 25973512  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  25973513 taatgttagcc 25973523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 6883486 - 6883594
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    ||||||||||||||||| |||||| ||||| | || |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6883486 tgagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 6883585  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  6883586 ttaatgtta 6883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 32000333 - 32000222
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| |||| |       |||||||||||| |||||||| ||||||||||||||||||||||||  | ||||||    
T  32000333 tgagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatgacagaataaccacccttagattttatcaagaaattgtactgaaa 32000234  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  32000233 ttaatgttagcc 32000222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 44691100 - 44690984
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    |||||||||||||| | |||||||||||| ||||||| ||||       |||||| ||||||||||||||| || |||||||||||||||||||| ||||    
T  44691100 ttaattgagcaatgttgtatatcaagaaagattttataaaaaaagattcaagaattacatggcagaataataactcttagattttatcaagaaattatcc 44691001  T
Q  271 tgaaattaatgttagcc 287  Q
      |||||||||||||||    
T  44691000 caaaattaatgttagcc 44690984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 27523322 - 27523210
Alignment:
Q  177 gagcaatgctatata--tcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    |||||||||||||||  ||||||| ||||||||||| |       |||||||||||| ||||||||||||||||| |||||||||||||||  ||| |||    
T  27523322 gagcaatgctatatacatcaagaacaattttatcaagaaaaatttaagaatgacatgacagaataatcacccttaaattttatcaagaaattgtcccgaa 27523223  T
Q  275 attaatgttagcc 287  Q
    |||||||||||||    
T  27523222 attaatgttagcc 27523210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 40273702 - 40273812
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||| ||||||||||| ||||| |||| |       |||||||||||| || |||||||||||||||||||||| |||||||  | |||||||    
T  40273702 gagcaatgctagatatcaagaaagattttttcaagaaaaattcaagaatgacatgtcaaaataatcacccttagattttattaagaaattgtactgaaat 40273801  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  40273802 taatgttagcc 40273812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 51737548 - 51737612
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    |||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  51737548 aagaatgataaggcagaataatcacccttaaattttatcaagaaatagtcctgaaattaatgtta 51737612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 33786657 - 33786590
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||  | ||||||||||||||||||    
T  33786657 aagaatgacatggcacaataatcacccttaaattttatcaagaaattgtactgaaattaatgttagcc 33786590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 34519758 - 34519868
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||| || |       || |||| ||| | |||||||||  |||||||||||||||| ||||  |||||||||    
T  34519758 gagcaatgctatatatcaagaaagattttattaagaaagattcaaaaatgccatagaagaataatcgaccttagattttatcaaaaaattgtcctgaaat 34519857  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  34519858 taatgttagcc 34519868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 20305123 - 20305086
Alignment:
Q  250 gattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20305123 gattttatcaagaaataatcctgaaattaatgttagcc 20305086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 44690859 - 44690892
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagatt 253  Q
    ||||||||||||||||||||||||||||||||||    
T  44690859 aagaatgacatggcagaataatcacccttagatt 44690892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 32000103 - 32000137
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  32000103 aagaatgacatggcacaataatcacccttagattt 32000137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 33786468 - 33786502
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  33786468 aagaatgacatggcacaataatcacccttagattt 33786502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 40273936 - 40273902
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  40273936 aagaatgacatggcacaataatcacccttagattt 40273902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 52329503 - 52329469
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||| |||||||||||||||||||||||    
T  52329503 aagaatgacatagcagaataatcacccttagattt 52329469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 4974801 - 4974690
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4974801 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaattatcctgaaa 4974702  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  4974701 ttaatgttagcc 4974690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 34482834 - 34482945
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||||| || |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34482834 tgagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 34482933  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  34482934 ttaatgttagcc 34482945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 42611811 - 42611921
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42611811 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 42611910  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  42611911 taatgttagcc 42611921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 45637712 - 45637822
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45637712 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 45637811  T
Q  277 taatgttagcc 287  Q
    ||||| |||||    
T  45637812 taatgctagcc 45637822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 48880994 - 48880885
Alignment:
Q  175 ttgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    ||||||||||||||||||||||||| |||||||||| |       |||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  48880994 ttgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcctgaa 48880895  T
Q  275 attaatgtta 284  Q
    ||||||||||    
T  48880894 attaatgtta 48880885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 3961977 - 3962089
Alignment:
Q  175 ttgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    ||||||||||||||||||||||||| |||||||||| |       |||||||||||| ||||||||||||||||| |||||||||||||||| || ||||    
T  3961977 ttgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatcacccttaaattttatcaagaaatagtcttgaa 3962076  T
Q  275 attaatgttagcc 287  Q
    |||||||||||||    
T  3962077 attaatgttagcc 3962089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 15329273 - 15329381
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||    
T  15329273 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcttgaaat 15329372  T
Q  277 taatgttag 285  Q
    |||||||||    
T  15329373 taatgttag 15329381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 15577915 - 15577805
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||||||||| |||||||||||| | || ||||||    
T  15577915 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagactttatcaagaaaaagtcttgaaat 15577816  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  15577815 taatgttagcc 15577805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 35444552 - 35444665
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    ||||| |||||||||||||||| |||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  35444552 ttaatagagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttc 35444651  T
Q  271 tgaaattaatgtta 284  Q
    ||||||||||||||    
T  35444652 tgaaattaatgtta 35444665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 20010163 - 20010053
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||||||||||       |||||||||||  |||||||||||||||||||||||||||| ||||  ||||||||    
T  20010163 tgagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacata-cagaataatcacccttagattttatcaaaaaattgtcctgaaa 20010065  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  20010064 ttaatgttagcc 20010053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 15238376 - 15238490
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    |||| |||||||||||||||||||||||||| ||| |||| |       |||||||||||||||||||||||||| |||||||||||||||||||  | |    
T  15238376 ttaaatgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaataatcaccattagattttatcaagaaattgtac 15238475  T
Q  271 tgaaattaatgttag 285  Q
    |||||||||||||||    
T  15238476 tgaaattaatgttag 15238490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 42696083 - 42696191
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| ||||||| ||||       ||||||||||| |||||||||||||||||| |||||||||||||||  |||||||||    
T  42696083 gagcaatgttatatatcaagaaagattttattaaaaattttttaagaatgacatagcagaataatcacccttatattttatcaagaaattgtcctgaaat 42696182  T
Q  277 taatgttag 285  Q
    |||||||||    
T  42696183 taatgttag 42696191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 24394971 - 24395082
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||  ||| |||||||||||||| ||||| | ||||||    
T  24394971 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataacaacctttagattttatcaaaaaatagttctgaaa 24395070  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  24395071 ttaatgttagcc 24395082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 25167915 - 25167808
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| | || |       |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  25167915 gagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatcatccttagattttatcaagaaatagttctgaaat 25167816  T
Q  277 taatgtta 284  Q
    ||||||||    
T  25167815 taatgtta 25167808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 37477145 - 37477035
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||| ||||| |||||||||||||||  | |||||||    
T  37477145 gagcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgacatggcagaataatcatccttaaattttatcaagaaattgtactgaaat 37477046  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  37477045 taatgttagcc 37477035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 30848612 - 30848676
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  30848612 aagaatgacatggcagaataatcatccttagattttatcaagaaatagtcctgaaattaatgtta 30848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 36790533 - 36790421
Alignment:
Q  175 ttgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    |||| ||||||||||||||||||||  ||||||||| |       |||||||||||||||||||||| ||||||| |||||||||||||||  | |||||    
T  36790533 ttgaacaatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgacatggcagaataattacccttaaattttatcaagaaattgttctgaa 36790434  T
Q  275 attaatgttagcc 287  Q
    |||||||||||||    
T  36790433 attaatgttagcc 36790421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 18036978 - 18037088
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| ||||| |||| |       |||||||||||||||||||||||||||||| |||||||||| ||||  | |||||||    
T  18036978 gagcaatgatatatatcaagaaagattttttcaagaaaaatttaagaatgacatggcagaataatcacccttaaattttatcaaaaaattgtactgaaat 18037077  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  18037078 taatgttagcc 18037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 40880814 - 40880747
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||    
T  40880814 aagaatgacatggcagaataatcatccttaaattttatgaagaaattatcctgaaattaatgttagcc 40880747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 29737143 - 29737249
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    ||||||||||||||||||| ||||| | || |       ||||||||||||| |||||||||||||||||||||||| |||||||  ||| |||||||||    
T  29737143 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggtagaataatcacccttagattttattaagaaattgtcccgaaattaat 29737242  T
Q  281 gttagcc 287  Q
    |||||||    
T  29737243 gttagcc 29737249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 4974572 - 4974606
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  4974572 aagaatgacatggcacaataatcacccttagattt 4974606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 11361197 - 11361086
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11361197 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 11361098  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  11361097 ttaatgttagcc 11361086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 38899797 - 38899684
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    ||||| ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  38899797 ttaatagagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataaccacccttagattttatcaagaaatagtcc 38899698  T
Q  271 tgaaattaatgtta 284  Q
    ||||||||||||||    
T  38899697 tgaaattaatgtta 38899684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 2477636 - 2477744
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  2477636 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 2477735  T
Q  277 taatgttag 285  Q
    |||||||||    
T  2477736 taatgttag 2477744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 3362778 - 3362885
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3362778 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaat 3362877  T
Q  277 taatgtta 284  Q
    ||||||||    
T  3362878 taatgtta 3362885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 4892202 - 4892309
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4892202 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 4892301  T
Q  277 taatgtta 284  Q
    ||||||||    
T  4892302 taatgtta 4892309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 25398238 - 25398345
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 25398337  T
Q  277 taatgtta 284  Q
    ||||||||    
T  25398338 taatgtta 25398345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 12850798 - 12850908
Alignment:
Q  174 attgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctga 273  Q
    |||||||||||||||||||||||||| |||||||||| |       || |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  12850798 attgagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacatggcagaataaccacccttagattttatcaagaaatagtcctga 12850897  T
Q  274 aattaatgtta 284  Q
    |||||||||||    
T  12850898 aattaatgtta 12850908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 33584395 - 33584287
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  33584395 tgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcctgaaa 33584296  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  33584295 ttaatgtta 33584287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 22913120 - 22913009
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  22913120 tgagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgaaa 22913021  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  22913020 ttaatgttagcc 22913009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 12614798 - 12614688
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||| || ||||||||||||||||||||||||||||||  |||||||||    
T  12614798 gagcaatgctatatatcaagaaatattttatcaagaaagattcaagaatgacatgacataataatcacccttagattttatcaagaaattgtcctgaaat 12614699  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  12614698 taatgttagcc 12614688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 14138668 - 14138778
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||||| |       |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  14138668 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaattacatggcagaataatcacccttaaattttatcaagaaatagtcctgaaat 14138767  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  14138768 taatgttagcc 14138778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 6043576 - 6043473
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  6043576 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggaagaataatcacccttagattttatcaagaaatagtgctgaaat 6043477  T
Q  277 taat 280  Q
    ||||    
T  6043476 taat 6043473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 8145379 - 8145485
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    |||| |||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaactaat 8145478  T
Q  281 gttagcc 287  Q
    |||||||    
T  8145479 gttagcc 8145485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 17545756 - 17545642
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    |||| |||||||||||||||||||||||||| ||| |||| |       |||||||||||||||||||||||||| |||||||||||||||||||  | |    
T  17545756 ttaaatgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaataatcaccattagattttatcaagaaattgtac 17545657  T
Q  271 tgaaattaatgttag 285  Q
    |||||||||||||||    
T  17545656 tgaaattaatgttag 17545642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 4434073 - 4433965
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| | || |       |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  4434073 tgagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagttctgaaa 4433974  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  4433973 ttaatgtta 4433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 37321859 - 37321748
Alignment:
Q  177 gagcaatgctatatatc-aagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    ||||||||||||||||| |||||| |||||||||| |       |||||||||||||||||||||||||||||| |||||||||| ||||| || |||||    
T  37321859 gagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttaaattttatcaataaatagtcttgaaa 37321760  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  37321759 ttaatgttagcc 37321748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 3522072 - 3521964
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    ||||||||| |||||||||||||| ||||| |||| |       || ||||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  3522072 tgagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacatggcagaataatcaccattagattttatcaagaaatagttctgaaa 3521973  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  3521972 ttaatgtta 3521964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 31640962 - 31640895
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||    
T  31640962 aagaatgacatggcagaataaccacccttagattttatcaagaaattgtcatgaaattaatgttagcc 31640895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 22912894 - 22912928
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  22912894 aagaatgacatggcacaataatcacccttagattt 22912928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 12614536 - 12614609
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||| |||||||| |  ||||||||||||       ||||||||||||||| |||||||||| ||||||||    
T  12614536 aatgctagatatcaagtatgattttatcaaaaaagatttaagaatgacatggcacaataatcacctttagattt 12614609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 41011 - 41121
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  41011 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 41110  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  41111 taatgttagcc 41121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 33695392 - 33695282
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33695392 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 33695293  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  33695292 taatgttagcc 33695282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 33696696 - 33696806
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33696696 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 33696795  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  33696796 taatgttagcc 33696806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 17176087 - 17175976
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  17176087 tgagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaataatcacccttagattttatcaagaaataatcatgaaa 17175988  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  17175987 ttaatgttagcc 17175976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 18365638 - 18365528
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||    
T  18365638 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaat 18365539  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  18365538 taatgttagcc 18365528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 18370902 - 18370792
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||    
T  18370902 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaat 18370803  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  18370802 taatgttagcc 18370792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 17705532 - 17705420
Alignment:
Q  175 ttgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    ||||||||||||||||||||||||| |||||||||| |       |||||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  17705532 ttgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatcacccttagattttatcaagaaattgtcctgaa 17705433  T
Q  275 attaatgttagcc 287  Q
    |||||||||||||    
T  17705432 attaatgttagcc 17705420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 23291149 - 23291042
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  23291149 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaat 23291050  T
Q  277 taatgtta 284  Q
    ||||||||    
T  23291049 taatgtta 23291042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 2309488 - 2309378
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| ||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2309488 gagcaatgttatatatcaagaaagattttatcaaaatttttttaagaatggcatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 2309389  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  2309388 taatgttagcc 2309378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 6127275 - 6127386
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctg-aaa 275  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || || |||    
T  6127275 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaaa 6127374  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  6127375 ttaatgttagcc 6127386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 28675148 - 28675257
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||| | |||||||||||||||||||||||||||||||  |||||||||    
T  28675148 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgtcggaataatcacccttagattttatcaagaaattgtcctgaaat 28675247  T
Q  277 taatgttagc 286  Q
    ||||||||||    
T  28675248 taatgttagc 28675257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 11548647 - 11548543
Alignment:
Q  183 tgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgt 282  Q
    ||||||||||||||||||||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||    
T  11548647 tgctatatatcaagaaaaattttctcaagaaaaattcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgatattaatgt 11548548  T
Q  283 tagcc 287  Q
    |||||    
T  11548547 tagcc 11548543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 6031806 - 6031699
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||| ||||| |       |||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||    
T  6031806 gagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgacatgacagaataatcacccttaaattttatcaagaaatagtcttgaaat 6031707  T
Q  277 taatgtta 284  Q
    ||||||||    
T  6031706 taatgtta 6031699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 25986930 - 25987037
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||| || |       ||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  25986930 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgacatggcaaaataatcactcttaaattttatcaagaaatagtcctgaaat 25987029  T
Q  277 taatgtta 284  Q
    ||||||||    
T  25987030 taatgtta 25987037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 9752309 - 9752200
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||||| || ||||| |       |||||||| ||||||||||||||||||||||||||||| |||||||  |||||||||    
T  9752309 gagcaatgttatatatcaagaaaaaatt-atcaagaaaaattcaagaatgatatggcagaataatcacccttagattttattaagaaattgtcctgaaat 9752211  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  9752210 taatgttagcc 9752200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 32702248 - 32702308
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32702248 aagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaat 32702308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 8515787 - 8515681
Alignment:
Q  180 caatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaa 279  Q
    |||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||  || ||||||||||||||||  ||| ||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaagacagatttaagaatgacatggcagaataatcacattt-gattttatcaagaaattgtcccgaaattaa 8515689  T
Q  280 tgttagcc 287  Q
    ||||||||    
T  8515688 tgttagcc 8515681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 18889761 - 18889683
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagatttta 256  Q
    ||||||||||||||||||||||| |||| ||||| |       |||||||||||||||||||||| ||||||||||||||    
T  18889761 gagcaatgctatatatcaagaaagattt-atcaagaaaatttcaagaatgacatggcagaataataacccttagatttta 18889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 29693712 - 29693639
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||| ||||||||||  |||||||||| |       |||||||||||||||||||||| ||||||||||||    
T  29693712 aatgctagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataatgacccttagattt 29693639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 2309260 - 2309294
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  2309260 aagaatgacatggcacaataatcacccttagattt 2309294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 11548426 - 11548460
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  11548426 aagaatgacatggcacaataatcacccttagattt 11548460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 10442854 - 10442744
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10442854 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 10442755  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  10442754 taatgttagcc 10442744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 7745176 - 7745067
Alignment:
Q  178 agcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatt 277  Q
    |||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaatt 7745077  T
Q  278 aatgttagcc 287  Q
    ||||||||||    
T  7745076 aatgttagcc 7745067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 49387954 - 49387846
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49387954 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 49387855  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  49387854 ttaatgtta 49387846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 31078884 - 31078777
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31078884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 31078785  T
Q  277 taatgtta 284  Q
    ||||||||    
T  31078784 taatgtta 31078777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 44893426 - 44893533
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44893426 gagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 44893525  T
Q  277 taatgtta 284  Q
    ||||||||    
T  44893526 taatgtta 44893533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 21802387 - 21802277
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  21802387 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 21802288  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  21802287 taatgttagcc 21802277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 2624836 - 2624944
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  2624836 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaaatggcagaataatcacccttagattttatcaagaaataatcatgaaa 2624935  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  2624936 ttaatgtta 2624944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 23964530 - 23964422
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  23964530 gagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 23964431  T
Q  277 taatgttag 285  Q
    |||||||||    
T  23964430 taatgttag 23964422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 4751446 - 4751553
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  4751446 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaat 4751545  T
Q  277 taatgtta 284  Q
    ||||||||    
T  4751546 taatgtta 4751553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 36072947 - 36073054
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  36072947 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaat 36073046  T
Q  277 taatgtta 284  Q
    ||||||||    
T  36073047 taatgtta 36073054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 47290066 - 47290173
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47290066 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 47290165  T
Q  277 taatgtta 284  Q
    ||||||||    
T  47290166 taatgtta 47290173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 33530753 - 33530643
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || |||||     
T  33530753 gagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaac 33530654  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  33530653 taatgttagcc 33530643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 53123030 - 53123138
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaa-annnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    ||||||||||||||||||||||| ||||| ||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53123030 gagcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 53123129  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  53123130 ttaatgtta 53123138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 22199260 - 22199371
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||| |||||||||||||||||||||| || |||||    
T  22199260 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcagccttagattttatcaagaaatagtcttgaaa 22199359  T
Q  276 ttaatgttagcc 287  Q
     |||||||||||    
T  22199360 ctaatgttagcc 22199371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 24128239 - 24128346
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  24128239 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcatccttagattttatcaagaaatagtcctgaaat 24128338  T
Q  277 taatgtta 284  Q
    ||||||||    
T  24128339 taatgtta 24128346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 37935006 - 37934899
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||| ||| ||||||||||||       ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  37935006 gagcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgacatggtagaatactcacccttagattttatcaagaaattatcctgaaat 37934907  T
Q  277 taatgtta 284  Q
    ||||||||    
T  37934906 taatgtta 37934899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 17655473 - 17655540
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17655473 aagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagcc 17655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 44893279 - 44893171
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnn-aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||| |||||| ||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44893279 gagcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaa 44893180  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  44893179 ttaatgtta 44893171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 46441843 - 46441951
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| | || |       ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  46441843 tgagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgacatggcaaaataatcacccttagattttatcaagaaatagtcctgaaa 46441942  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  46441943 ttaatgtta 46441951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 9088913 - 9088977
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9088913 aagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgtta 9088977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 42671675 - 42671776
Alignment:
Q  183 tgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgt 282  Q
    ||||||||||||| ||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctaaaattaatgt 42671774  T
Q  283 ta 284  Q
    ||    
T  42671775 ta 42671776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 24392667 - 24392775
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||||||||| |||||||||||||||  | |||||||    
T  24392667 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatcacccttaaattttatcaagaaattgtactgaaat 24392766  T
Q  277 taatgttag 285  Q
    |||||||||    
T  24392767 taatgttag 24392775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 36073354 - 36073457
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    ||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattcatgaaattaat 36073453  T
Q  281 gtta 284  Q
    ||||    
T  36073454 gtta 36073457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 50156643 - 50156536
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||||||||| |||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||    
T  50156643 gagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcataaaat 50156544  T
Q  277 taatgtta 284  Q
    ||||||||    
T  50156543 taatgtta 50156536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 11314255 - 11314189
Alignment:
Q  221 agaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||  | ||||||||||||||||||    
T  11314255 agaatgacatgacagaataatcatccttagattatatcaagaaattgttctgaaattaatgttagcc 11314189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 37219671 - 37219733
Alignment:
Q  223 aatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttag 285  Q
    |||||||||| | ||||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  37219671 aatgacatggtaaaataatcactcttaaattttatcaagaaattgtcctgaaattaatgttag 37219733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 44744481 - 44744543
Alignment:
Q  223 aatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttag 285  Q
    |||||||||| |||||||||||||||| |||||||||| ||||  |||||||||| |||||||    
T  44744481 aatgacatggtagaataatcacccttaaattttatcaaaaaattgtcctgaaattgatgttag 44744543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 30563255 - 30563315
Alignment:
Q  223 aatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtt 283  Q
    ||||||| ||||||||| ||| | ||||||||||||||||||| |||||| ||||||||||    
T  30563255 aatgacacggcagaatagtcatctttagattttatcaagaaattatcctgcaattaatgtt 30563315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 36073765 - 36073698
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||| || |||||||||  ||||||||||| |||||||  |||| |||||||| ||||||    
T  36073765 aagaatgacatgacaaaataatcacttttagattttatgaagaaattgtcctaaaattaatattagcc 36073698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 37219859 - 37219825
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    |||||||||||||||||||||||| ||||||||||    
T  37219859 aagaatgacatggcagaataatcatccttagattt 37219825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 6041878 - 6041994
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    |||| |||||||||||||||||||||||| |||||||||| |       |||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  6041878 ttaaatgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcc 6041977  T
Q  271 tgaaattaatgttagcc 287  Q
    |||||||||||||||||    
T  6041978 tgaaattaatgttagcc 6041994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 2754717 - 2754824
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  2754717 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacctttagattttatcaagaaatagtcctgaaat 2754816  T
Q  277 taatgtta 284  Q
    ||||||||    
T  2754817 taatgtta 2754824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 11347268 - 11347378
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  11347268 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataataacccttagattttatcaggaaatagtcctgaaat 11347367  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  11347368 taatgttagcc 11347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 33113793 - 33113903
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||| || |       |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33113793 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaattacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 33113892  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  33113893 taatgttagcc 33113903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 33145712 - 33145822
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33145712 tgagcaatgctatatatcaagaaagattttattaaaaaatttt-aagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaa 33145810  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  33145811 ttaatgttagcc 33145822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 37217124 - 37217011
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcc 270  Q
    |||| |||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||||||| |||||||||||||||| ||     
T  37217124 ttaaatgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtca 37217025  T
Q  271 tgaaattaatgtta 284  Q
    ||||||||||||||    
T  37217024 tgaaattaatgtta 37217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 3456063 - 3456171
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  3456063 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctggaa 3456162  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  3456163 ttaatgtta 3456171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 3137479 - 3137372
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  3137479 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcaaaataatcacccttagattttatcaagaaatagtcctgaaat 3137380  T
Q  277 taatgtta 284  Q
    ||||||||    
T  3137379 taatgtta 3137372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 3574592 - 3574481
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctg-aaa 275  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || || |||    
T  3574592 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaaa 3574493  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  3574492 ttaatgttagcc 3574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 48160904 - 48161015
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  48160904 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcttgaaa 48161003  T
Q  276 ttaatgttagcc 287  Q
    ||||| ||||||    
T  48161004 ttaatattagcc 48161015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 42297347 - 42297464
Alignment:
Q  171 ttaattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggc-agaataatcacccttagattttatcaagaaataatc 269  Q
    ||||| ||||||||||||||||||||||| |||||||||| |       |||||||||||| | ||||||||||||||||||||||||||||||||| |     
T  42297347 ttaatagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgactagaataatcacccttagattttatcaagaaatagtt 42297446  T
Q  270 ctgaaattaatgttagcc 287  Q
    ||||||||||||||||||    
T  42297447 ctgaaattaatgttagcc 42297464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 30385010 - 30385118
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    ||||||||||||| |||||||||| |||||||||| |       || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  30385010 tgagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacatggcagaataatcacccttatattttatcaagaaatagtcctgaaa 30385109  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  30385110 ttaatgtta 30385118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 34482975 - 34482868
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  34482975 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggtagaataatcacccttagattttatcaagaaatagtcctgaaat 34482876  T
Q  277 taatgtta 284  Q
    ||||||||    
T  34482875 taatgtta 34482868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 22426409 - 22426299
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| ||||||| |||||| |||||||||| |       || |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  22426409 gagcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 22426310  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  22426309 taatgttagcc 22426299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 3089460 - 3089527
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3089460 aagaatgacatggcagaataatcacccttagattttatcaagaaatattcttgaaattaatgttagcc 3089527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 8362111 - 8362000
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    ||||||||||||||||||||||||||   | |||| |       ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  8362111 tgagcaatgctatatatcaagaaaaaaaatttcaagaaaaattcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgaaa 8362012  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  8362011 ttaatgttagcc 8362000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 8320649 - 8320539
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||||| |       |||||||| |||||| |||||||||||||| |||||||||||||||| || ||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatcaagaaaattttaagaatgatatggcaaaataatcacccttaaattttatcaagaaatagtcttgaaat 8320550  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  8320549 taatgttagcc 8320539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 36865092 - 36864982
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||||||||| ||| || ||||||| || |       ||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||||||    
T  36865092 gagcaatgctatatattaaggaagattttattaagaaaattttaagaatgacatggtagaataatcacccttaggttttatcaaaaaatagtcctgaaat 36864993  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  36864992 taatgttagcc 36864982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 9797093 - 9796984
Alignment:
Q  178 agcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatt 277  Q
    ||||||| |||||||||||||| ||||| |||| |       |||||||||||||||||||||||||| |||||||||||||||||||  | || |||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatcaccattagattttatcaagaaattgtacttaaatt 9796994  T
Q  278 aatgttagcc 287  Q
    ||||||||||    
T  9796993 aatgttagcc 9796984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 19650965 - 19650854
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctg-aaa 275  Q
    |||||||| ||||||| |||||| |||||||||| |       |||||||||||||||||||||||||| |||||||||||||||||| | || || |||    
T  19650965 gagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcaccattagattttatcaagaaacagtcttgaaaa 19650866  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  19650865 ttaatgttagcc 19650854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 37522053 - 37522160
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||| ||||||||||||||| ||||| |||| |       |||||||||||| ||||||||||||||| ||||||||| |||||||| || ||||||    
T  37522053 gagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaataatcaccctaagattttataaagaaatagtcatgaaat 37522152  T
Q  277 taatgtta 284  Q
    ||||||||    
T  37522153 taatgtta 37522160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 42297920 - 42297974
Alignment:
Q  233 cagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42297920 cagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagcc 42297974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 33839531 - 33839641
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| ||||||| |||||| ||||||||||||       |||||| ||||| ||||||||||||| |||||||||||||||||||  |  ||||||    
T  33839531 gagcaatgttatatattaagaaagattttatcaaaaaaaatttaagaataacatgacagaataatcaccattagattttatcaagaaattgttttgaaat 33839630  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  33839631 taatgttagcc 33839641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 41883245 - 41883180
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttag 285  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||    
T  41883245 aagaatgacatggcagaataatcacccttaaattttatcaagaaattgtcccgaaattaatgttag 41883180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 24343547 - 24343657
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||||||||| |||||| |||||||||| |       || | | | |||||||||||||||| ||||||||||||||||||||  | | |||||    
T  24343547 gagcaatgctatatattaagaaagattttatcaagaaaaattcaaaattaatatggcagaataatcactcttagattttatcaagaaattgttccgaaat 24343646  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  24343647 taatgttagcc 24343657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 47738117 - 47738215
Alignment:
Q  189 atatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||| |||||||||| |       |||||||| ||||||||||||| ||| ||||||||||| || ||||  ||||||||||||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatgatatggcagaataattacctttagattttataaaaaaattgtcctgaaattaatgttagcc 47738215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 42921154 - 42921253
Alignment:
Q  188 tatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||| |||||||||| |       |||||||||||| | |||| ||  || |||||||||||||||||||  ||||||| ||||||||||||    
T  42921154 tatatcaagaaagattttatcaagaaaattttaagaatgacatgaccgaatgattgcctttagattttatcaagaaattgtcctgaatttaatgttagcc 42921253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 30936539 - 30936502
Alignment:
Q  62 ttatgaaaatgaataaatatcgacaattgacttttaca 99  Q
    |||||||||||||||||||||||||||||| |||||||    
T  30936539 ttatgaaaatgaataaatatcgacaattgaattttaca 30936502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 26612785 - 26612890
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||  |||||||||| ||| ||||||| ||||       ||||||||||||||||||||| ||   ||||||||||| || ||||| |||| ||||    
T  26612785 gagcaatattatatatcaaaaaagattttataaaaaaaaattcaagaatgacatggcagaataaccatttttagattttattaaaaaatagtccttaaat 26612884  T
Q  277 taatgt 282  Q
    ||||||    
T  26612885 taatgt 26612890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 36864831 - 36864904
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||| ||||||||||  ||||||||||||       |||||||||||| || |||||||||||||||||||    
T  36864831 aatgctagatatcaagaatgattttatcaaaaaagattcaagaatgacatgacacaataatcacccttagattt 36864904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 41224233 - 41224342
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||| |||||||||| |||||| ||||| |||| |       ||||||||||||| ||||| |||||||||  ||||||| |||||||  |  ||||||    
T  41224233 gagcactgctatatattaagaaagattttctcaagaaaaattcaagaatgacatggtagaattatcacccttgaattttattaagaaattgtattgaaat 41224332  T
Q  277 taatgttagc 286  Q
    ||||||||||    
T  41224333 taatgttagc 41224342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 40327897 - 40327935
Alignment:
Q  249 agattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  40327897 agattttatcaagaaattgtcctgaaattaatgttagcc 40327935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 46918959 - 46919011
Alignment:
Q  234 agaataatcacccttagattttatcaagaaataatcctgaaattaatgttagc 286  Q
    |||||||| ||| |||||||||||||||||||  ||  |||||||||||||||    
T  46918959 agaataattacctttagattttatcaagaaattgtctcgaaattaatgttagc 46919011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 32064745 - 32064852
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32064745 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaataattctgaaat 32064844  T
Q  277 taatgtta 284  Q
    ||||||||    
T  32064845 taatgtta 32064852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 20091866 - 20091756
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  20091866 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatcgtcctgaaat 20091767  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  20091766 taatgttagcc 20091756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 34665382 - 34665492
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  34665382 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 34665481  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  34665482 taatgttagcc 34665492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 37986116 - 37986010
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    ||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaat 37986017  T
Q  281 gttagcc 287  Q
    | |||||    
T  37986016 gctagcc 37986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 14128865 - 14128974
Alignment:
Q  178 agcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatt 277  Q
    |||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaatt 14128964  T
Q  278 aatgttagcc 287  Q
    ||||||||||    
T  14128965 aatgttagcc 14128974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 35353040 - 35353148
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35353040 tgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaataatcatgaaa 35353139  T
Q  276 ttaatgtta 284  Q
    |||||||||    
T  35353140 ttaatgtta 35353148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 17841915 - 17841808
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17841915 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 17841816  T
Q  277 taatgtta 284  Q
    ||||||||    
T  17841815 taatgtta 17841808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 32393857 - 32393968
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  32393857 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaa 32393956  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  32393957 ttaatgttagcc 32393968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 40780194 - 40780087
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40780194 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 40780095  T
Q  277 taatgtta 284  Q
    ||||||||    
T  40780094 taatgtta 40780087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 31347847 - 31347737
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  31347847 gagcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 31347748  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  31347747 taatgttagcc 31347737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 39772866 - 39772756
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  39772866 gagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacatggcagaataatcacccttagattttatcaaaaaatagtcttgaaat 39772767  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  39772766 taatgttagcc 39772756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 1646030 - 1645921
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  1646030 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaaagacatggcagaataatcacccttagattttatcaagaaatagtcttgaaat 1645931  T
Q  277 taatgttagc 286  Q
    ||||||||||    
T  1645930 taatgttagc 1645921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 42755107 - 42755000
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42755107 gagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcatgaaat 42755008  T
Q  277 taatgtta 284  Q
    ||||||||    
T  42755007 taatgtta 42755000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 15187560 - 15187670
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       |||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||    
T  15187560 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataattacccttagattttatcaagaaatagtcttgaaat 15187659  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  15187660 taatgttagcc 15187670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 41819843 - 41819733
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||||| |       |||||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  41819843 gagcaatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 41819744  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  41819743 taatgttagcc 41819733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 27782181 - 27782072
Alignment:
Q  178 agcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatt 277  Q
    |||||||||||||||||||||| |||||||||| |       || |||||||||||||||||||||||||||||||||||||||||||  || |||||||    
T  27782181 agcaatgctatatatcaagaaatattttatcaagaaagattcaataatgacatggcagaataatcacccttagattttatcaagaaattgtcttgaaatt 27782082  T
Q  278 aatgttagcc 287  Q
    ||||||||||    
T  27782081 aatgttagcc 27782072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 6108298 - 6108191
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| ||||| | || |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6108298 gagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 6108199  T
Q  277 taatgtta 284  Q
    ||||||||    
T  6108198 taatgtta 6108191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 24211618 - 24211511
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||| |||||||||||||||||||||| |||||||||||||||| || ||||||    
T  24211618 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatggcatggcagaataatcacccttaaattttatcaagaaatagtcttgaaat 24211519  T
Q  277 taatgtta 284  Q
    ||||||||    
T  24211518 taatgtta 24211511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 30835111 - 30835004
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||| |||       ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||    
T  30835111 gagcaatgttatatatcaagaaagattttatcgaaaaaattc-aagaatgacatggcagaataatcaccctttgattttatcaagaaattgtcctgaaat 30835013  T
Q  277 taatgttag 285  Q
    |||||||||    
T  30835012 taatgttag 30835004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 8453837 - 8453939
Alignment:
Q  180 caatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaa 279  Q
    |||||||||||||||||||| ||||| |||| |       |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatgacaaaataatcacccttagattttatcaagaaatagtcctgaaattaa 8453936  T
Q  280 tgt 282  Q
    |||    
T  8453937 tgt 8453939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 3597063 - 3596999
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  3597063 aagaatgacatggcagaataattacccttagattttatcaagaaatagtcctgaaattaatgtta 3596999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 26042181 - 26042071
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttaga---ttttatcaagaaataatcctga 273  Q
    |||||||||||||||| |||||| |||||||||| |       |||||||||||| |||||||||||||||||||   ||||||||||||||| ||||||    
T  26042181 gagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatcacccttagatttttttatcaagaaatagtcctga 26042082  T
Q  274 aattaatgtta 284  Q
    |||||||||||    
T  26042081 aattaatgtta 26042071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 25581261 - 25581197
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  25581261 aagaatgacatggcaaaataatcacctttagattttatcaagaaatagtcctgaaattaatgtta 25581197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 7017930 - 7017820
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||||||||||| |||| ||||| | || |       |||||||||||||||||||||||| |||||||||||||||||||||  | || ||||    
T  7017930 gagcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgacatggcagaataatcatccttagattttatcaagaaattgtactaaaat 7017831  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  7017830 taatgttagcc 7017820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 7022021 - 7022088
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||    
T  7022021 aagaatgatatggcagaataatcacccttagattttatcaagaaattgtaccgaaattaatgttagcc 7022088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 15972899 - 15972832
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||    
T  15972899 aagaatgacatgacagaataatcacccttagattttatcaagaaattgttctgaatttaatgttagcc 15972832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 24844919 - 24844814
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaat 280  Q
    ||||||| ||||||||||| ||||||| || |       |||||||||||| || ||||||||||||||||||||||||||||||  ||| |||||||||    
T  24844919 aatgctacatatcaagaaatattttattaagaaaaattcaagaatgacatgaca-aataatcacccttagattttatcaagaaattgtcccgaaattaat 24844821  T
Q  281 gttagcc 287  Q
    |||||||    
T  24844820 gttagcc 24844814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 3890638 - 3890572
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  ||  ||||||||||||||||    
T  3890638 aagaatgacatggcagaataatcacc-ttagattttatcaagaaattgtctcgaaattaatgttagcc 3890572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 37132726 - 37132651
Alignment:
Q  174 attgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcaccctta 249  Q
    |||||||||||||||||||||| ||| |||||||||| |       |||||||||||||||||||||||| |||||    
T  37132726 attgagcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgacatggcagaataatcatcctta 37132651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 10044390 - 10044453
Alignment:
Q  224 atgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||| ||||||||||| ||||| |||||||||||||||| |  || ||||||||||||||    
T  10044390 atgacatgacagaataatcatccttaaattttatcaagaaatagttttggaattaatgttagcc 10044453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 27835520 - 27835408
Alignment:
Q  175 ttgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaa 274  Q
    ||||||||||||||||||||| ||| || |||| || |       ||||||||||||| | |||||||| ||||||||||||| || ||||  || | ||    
T  27835520 ttgagcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgacatggtaaaataatcatccttagattttattaaaaaattgtcttcaa 27835421  T
Q  275 attaatgttagcc 287  Q
    |||||||||||||    
T  27835420 attaatgttagcc 27835408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 38016979 - 38017047
Alignment:
Q  185 ctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagatt 253  Q
    ||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||| ||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttggatt 38017047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 3817952 - 3817914
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatc 258  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  3817952 aagaattacatgacagaataatcacccttagattttatc 3817914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 3890413 - 3890488
Alignment:
Q  181 aatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagatttta 256  Q
    ||||||| ||||||||||  |||||||||| |       |||||||| ||||||||||||||||| ||||||||||    
T  3890413 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgatatggcagaataatcaccattagatttta 3890488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 20091638 - 20091672
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  20091638 aagaatgacatggcacaataatcacccttagattt 20091672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 34665609 - 34665575
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  34665609 aagaatgacatggcacaataatcacccttagattt 34665575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 30055744 - 30055708
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagatttta 256  Q
    |||||||||||| || |||||||||||||||||||||    
T  30055744 aagaatgacatgacacaataatcacccttagatttta 30055708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 35160757 - 35160864
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35160757 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 35160856  T
Q  277 taatgtta 284  Q
    ||||||||    
T  35160857 taatgtta 35160864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 9293641 - 9293531
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  9293641 gagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 9293542  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  9293541 taatgttagcc 9293531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 10661888 - 10661994
Alignment:
Q  178 agcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatt 277  Q
    |||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaatt 10661987  T
Q  278 aatgtta 284  Q
    |||||||    
T  10661988 aatgtta 10661994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 21936080 - 21936191
Alignment:
Q  176 tgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaa 275  Q
    |||||||||||||||||||||||| |||||||||| |       |||||||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  21936080 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcttgaaa 21936179  T
Q  276 ttaatgttagcc 287  Q
    ||||||||||||    
T  21936180 ttaatgttagcc 21936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 23268127 - 23268020
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23268127 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 23268028  T
Q  277 taatgtta 284  Q
    ||||||||    
T  23268027 taatgtta 23268020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 14941431 - 14941321
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||||| || |       ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  14941431 gagcaatgctatatatcaagaaagattttattaagaaagattcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaat 14941332  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  14941331 taatgttagcc 14941321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 43330912 - 43331022
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||    
T  43330912 gagcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgaaat 43331011  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  43331012 taatgttagcc 43331022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 31174896 - 31174789
Alignment:
Q  180 caatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaa 279  Q
    ||||| |||||||||||||| ||||||| || |       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31174896 caatgttatatatcaagaaagattttattaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaa 31174797  T
Q  280 tgttagcc 287  Q
    ||||||||    
T  31174796 tgttagcc 31174789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 33380207 - 33380314
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggctgaataatcacccttagattttatcaagaaatagtcctgaaat 33380306  T
Q  277 taatgtta 284  Q
    ||||||||    
T  33380307 taatgtta 33380314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 7475573 - 7475466
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  7475573 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatgatagaataatcacccttagattttatcaagaaatagtcctgaaat 7475474  T
Q  277 taatgtta 284  Q
    ||||||||    
T  7475473 taatgtta 7475466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 13354846 - 13354956
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||| |||||||||||||| |||||||||| |       |||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||    
T  13354846 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataattacccttagattttatcaagaaatagtcttgaaat 13354945  T
Q  277 taatgttagcc 287  Q
    |||||||||||    
T  13354946 taatgttagcc 13354956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 21393751 - 21393646
Alignment:
Q  179 gcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatta 278  Q
    ||||||||||||||||||||||||||| |||| |       ||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||    
T  21393751 gcaatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgacatggtagaataatcacccttagattttatcaagaaattgtactgaaatta 21393652  T
Q  279 atgtta 284  Q
    ||||||    
T  21393651 atgtta 21393646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 3989119 - 3989186
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3989119 aagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagcc 3989186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 9723405 - 9723514
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||||||||| |||||| ||||||| || |       |||||||||||| ||||||||||||||||| |||||||||||||||  ||| |||||    
T  9723405 gagcaatgctatatattaagaaagattttattaagaaagatttaagaatgacatgacagaataatcacccttaaattttatcaagaaattgtcccgaaat 9723504  T
Q  277 taatgttagc 286  Q
    ||||||||||    
T  9723505 taatgttagc 9723514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 27847632 - 27847740
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||| ||||| |||||| ||||||| || |       |||||||||||| ||||||||||||| |||||||||||||| ||||  |||||||||    
T  27847632 gagcaatgctgtatataaagaaagattttattaagaaagattcaagaatgacatgacagaataatcaccgttagattttatcaaaaaattgtcctgaaat 27847731  T
Q  277 taatgttag 285  Q
    |||||||||    
T  27847732 taatgttag 27847740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 40810854 - 40810909
Alignment:
Q  61 gttatgaaaatgaataaatatcgacaattgacttttacagattcaaagtattgata 116  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  40810854 gttatgaaaataaataaatatcgacaattggcttttacagattcaaagtattgata 40810909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 22591494 - 22591592
Alignment:
Q  189 atatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||| ||||||| ||||       |||||||| |||||||||||||| |||||| ||||||| |||||||  ||||||||||||||||||||    
T  22591494 atatcaagaaagattttattaaaaaaaattcaagaatgatatggcagaataatcccccttaaattttattaagaaattgtcctgaaattaatgttagcc 22591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 16767480 - 16767427
Alignment:
Q  234 agaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  16767480 agaataatcactcttaaattttatcaagaaattatcctgaaattaatgttagcc 16767427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 40810921 - 40810958
Alignment:
Q  110 attgataggtgacctatattaattcttactatttactg 147  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40810921 attgataggtgacctatattaattcttactatttactg 40810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 37335756 - 37335823
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||||||||||||||||  ||||||| |||||| ||||  | |||| |||||||||||||    
T  37335756 aagaatgacatggcagaataatcacttttagattgtatcaaaaaattgttctgatattaatgttagcc 37335823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 34320994 - 34321028
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattt 254  Q
    ||||||||||||||| |||||||||||||||||||    
T  34320994 aagaatgacatggcacaataatcacccttagattt 34321028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 3069 - 3178
Alignment:
Q  178 agcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaatt 277  Q
    |||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  3069 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaatt 3168  T
Q  278 aatgttagcc 287  Q
    ||||||||||    
T  3169 aatgttagcc 3178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 11616 - 11728
Alignment:
Q  172 taattgagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcct 271  Q
    |||||||||||||||||||||||||||| |||||||||| |       |||||||||||| |||||||||||||||||||||||||||||||||| || |    
T  11616 taattgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcat 11715  T
Q  272 gaaattaatgtta 284  Q
    |||||||||||||    
T  11716 gaaattaatgtta 11728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 4396 - 4503
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4396 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 4495  T
Q  277 taatgtta 284  Q
    ||||||||    
T  4496 taatgtta 4503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 47850 - 47957
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    |||||||||||| |||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47850 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaat 47949  T
Q  277 taatgtta 284  Q
    ||||||||    
T  47950 taatgtta 47957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 12842 - 12949
Alignment:
Q  177 gagcaatgctatatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaat 276  Q
    ||||||||||||||||||||||| ||||| |||| |       |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  12842 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatcatccttagattttatcaagaaatagtcctgaaat 12941  T
Q  277 taatgtta 284  Q
    ||||||||    
T  12942 taatgtta 12949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 8413 - 8509
Alignment:
Q  188 tatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    |||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgtta 8509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 15995 - 16091
Alignment:
Q  188 tatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    |||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgtta 16091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 25947 - 26043
Alignment:
Q  188 tatatcaagaaaaattttatcaaaannnnnnnaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgtta 284  Q
    |||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgtta 26043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 85469 - 85536
Alignment:
Q  220 aagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagcc 287  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||    
T  85469 aagaatgacatggcagaataatcatccttaaattttatgaagaaattatcctgaaattaatgttagcc 85536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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